Literature DB >> 18999129

Identification and extraction of family history information from clinical reports.

Sergey Goryachev1, Hyeoneui Kim, Qing Zeng-Treitler.   

Abstract

Many clinical reports contain family history, which is valuable information for clinical decision support and research. We developed a simple natural language processing algorithm to identify and extract family histories. The algorithm was tested on a set of discharge summaries and outpatient clinic notes. The precision and recall of extracting all diagnoses were 85.12% and 86.93%, respectively. The precision and recall of differentiating family history from patient history diagnoses were 96.30% and 92.86%, respectively. Both the precision and recall of exact family member assignment were 92.31%.

Entities:  

Mesh:

Year:  2008        PMID: 18999129      PMCID: PMC2656021     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  12 in total

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Authors:  W W Chapman; P J Haug
Journal:  Proc AMIA Symp       Date:  1999

2.  A statistical natural language processor for medical reports.

Authors:  R K Taira; S G Soderland
Journal:  Proc AMIA Symp       Date:  1999

3.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

4.  The family history--more important than ever.

Authors:  Alan E Guttmacher; Francis S Collins; Richard H Carmona
Journal:  N Engl J Med       Date:  2004-11-25       Impact factor: 91.245

5.  Using a natural language processing system to extract and code family history data from admission reports.

Authors:  Jeff Friedlin; Clement J McDonald
Journal:  AMIA Annu Symp Proc       Date:  2006

6.  A natural language parsing system for encoding admitting diagnoses.

Authors:  P J Haug; L Christensen; M Gundersen; B Clemons; S Koehler; K Bauer
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

7.  On experiences of i2b2 (Informatics for integrating biology and the bedside) database with Japanese clinical patients' data.

Authors:  Takako Takai-Igarashi; Ryo Akasaka; Kenji Suzuki; Takahisa Furukawa; Makiko Yoshida; Keisuke Inoue; Tomohisa Maruyama; Toshimasa Maejima; Masahiro Bando; Masakazu Takasaki; Miki Sakota; Maki Eguchi; Akihiko Konagaya; Hiroya Matsuura; Toyotaro Suzumura; Hiroshi Tanaka
Journal:  Bioinformation       Date:  2011-03-26

8.  Projecting individualized probabilities of developing breast cancer for white females who are being examined annually.

Authors:  M H Gail; L A Brinton; D P Byar; D K Corle; S B Green; C Schairer; J J Mulvihill
Journal:  J Natl Cancer Inst       Date:  1989-12-20       Impact factor: 13.506

9.  Calculating the benefits of a Research Patient Data Repository.

Authors:  Ruth Nalichowski; Diane Keogh; Henry C Chueh; Shawn N Murphy
Journal:  AMIA Annu Symp Proc       Date:  2006

10.  Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.

Authors:  Qing T Zeng; Sergey Goryachev; Scott Weiss; Margarita Sordo; Shawn N Murphy; Ross Lazarus
Journal:  BMC Med Inform Decis Mak       Date:  2006-07-26       Impact factor: 2.796

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  20 in total

1.  A multi-site content analysis of social history information in clinical notes.

Authors:  Elizabeth S Chen; Sharad Manaktala; Indra Neil Sarkar; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Evaluation of family history information within clinical documents and adequacy of HL7 clinical statement and clinical genomics family history models for its representation: a case report.

Authors:  Genevieve B Melton; Nandhini Raman; Elizabeth S Chen; Indra Neil Sarkar; Serguei Pakhomov; Robert D Madoff
Journal:  J Am Med Inform Assoc       Date:  2010 May-Jun       Impact factor: 4.497

3.  The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.

Authors:  Kirk Roberts; Sonya E Shooshan; Laritza Rodriguez; Swapna Abhyankar; Halil Kilicoglu; Dina Demner-Fushman
Journal:  J Biomed Inform       Date:  2015-06-26       Impact factor: 6.317

4.  Automated extraction of family history information from clinical notes.

Authors:  Robert Bill; Serguei Pakhomov; Elizabeth S Chen; Tamara J Winden; Elizabeth W Carter; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

5.  Multi-source development of an integrated model for family health history.

Authors:  Elizabeth S Chen; Elizabeth W Carter; Tamara J Winden; Indra Neil Sarkar; Yan Wang; Genevieve B Melton
Journal:  J Am Med Inform Assoc       Date:  2014-10-21       Impact factor: 4.497

6.  Characterizing the use and contents of free-text family history comments in the Electronic Health Record.

Authors:  Elizabeth S Chen; Genevieve B Melton; Timothy E Burdick; Paul T Rosenau; Indra Neil Sarkar
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

7.  Automatic Genetic Risk Assessment Calculation Using Breast Cancer Family History Data from the EHR compared to Self-Report.

Authors:  Margaret Sin; Julia E McGuinness; Meghna S Trivedi; Alejandro Vanegas; Thomas B Silverman; Katherine D Crew; Rita Kukafka
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

8.  Mining and Visualizing Family History Associations in the Electronic Health Record: A Case Study for Pediatric Asthma.

Authors:  Elizabeth S Chen; Genevieve B Melton; Richard C Wasserman; Paul T Rosenau; Diantha B Howard; Indra Neil Sarkar
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

Review 9.  What can natural language processing do for clinical decision support?

Authors:  Dina Demner-Fushman; Wendy W Chapman; Clement J McDonald
Journal:  J Biomed Inform       Date:  2009-08-13       Impact factor: 6.317

10.  Identification of Patients with Family History of Pancreatic Cancer--Investigation of an NLP System Portability.

Authors:  Saeed Mehrabi; Anand Krishnan; Alexandra M Roch; Heidi Schmidt; DingCheng Li; Joe Kesterson; Chris Beesley; Paul Dexter; Max Schmidt; Mathew Palakal; Hongfang Liu
Journal:  Stud Health Technol Inform       Date:  2015
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