Literature DB >> 18998838

Auditing complex concepts in overlapping subsets of SNOMED.

Yue Wang1, Duo Wei, Junchuan Xu, Gai Elhanan, Yehoshua Perl, Michael Halper, Yan Chen, Kent A Spackman, George Hripcsak.   

Abstract

Limited resources and the sheer volume of concepts make auditing a large terminology, such as SNOMED CT, a daunting task. It is essential to devise techniques that can aid an auditor by automatically identifying concepts that deserve attention. A methodology for this purpose based on a previously introduced abstraction network (called the p-area taxonomy) for a SNOMED CT hierarchy is presented. The methodology algorithmically gathers concepts appearing in certain overlapping subsets, defined exclusively with respect to the p-area taxonomy, for review. The results of applying the methodology to SNOMED's Specimen hierarchy are presented. These results are compared against a control sample composed of concepts residing in subsets without the overlaps. With the use of the double bootstrap, the concept group produced by our methodology is shown to yield a statistically significant higher proportion of error discoveries.

Mesh:

Year:  2008        PMID: 18998838      PMCID: PMC2656006     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  5 in total

1.  Ontology-based error detection in SNOMED-CT.

Authors:  Werner Ceusters; Barry Smith; Anand Kumar; Christoffel Dhaen
Journal:  Stud Health Technol Inform       Date:  2004

2.  Structural methodologies for auditing SNOMED.

Authors:  Yue Wang; Michael Halper; Hua Min; Yehoshua Perl; Yan Chen; Kent A Spackman
Journal:  J Biomed Inform       Date:  2006-12-24       Impact factor: 6.317

3.  Auditing as part of the terminology design life cycle.

Authors:  Hua Min; Yehoshua Perl; Yan Chen; Michael Halper; James Geller; Yue Wang
Journal:  J Am Med Inform Assoc       Date:  2006-08-23       Impact factor: 4.497

4.  Auditing description-logic-based medical terminological systems by detecting equivalent concept definitions.

Authors:  Ronald Cornet; Ameen Abu-Hanna
Journal:  Int J Med Inform       Date:  2007-08-10       Impact factor: 4.046

5.  Analysis of error concentrations in SNOMED.

Authors:  Michael Halper; Yue Wang; Hua Min; Yan Chen; George Hripcsak; Yehoshua Perl; Kent A Spackman
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11
  5 in total
  8 in total

1.  Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT.

Authors:  Duo Wei; Olivier Bodenreider
Journal:  Stud Health Technol Inform       Date:  2010

Review 2.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

3.  A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Ankur Agrawal; James T Case; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2014-10-20       Impact factor: 4.497

4.  Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED.

Authors:  Yue Wang; Michael Halper; Duo Wei; Yehoshua Perl; James Geller
Journal:  J Biomed Inform       Date:  2011-08-25       Impact factor: 6.317

Review 5.  Auditing complex concepts of SNOMED using a refined hierarchical abstraction network.

Authors:  Yue Wang; Michael Halper; Duo Wei; Huanying Gu; Yehoshua Perl; Junchuan Xu; Gai Elhanan; Yan Chen; Kent A Spackman; James T Case; George Hripcsak
Journal:  J Biomed Inform       Date:  2011-09-01       Impact factor: 6.317

6.  Sculpting the UMLS Refined Semantic Network.

Authors:  Zhe He; C Paul Morrey; Yehoshua Perl; Gai Elhanan; Ling Chen; Yan Chen; James Geller
Journal:  Online J Public Health Inform       Date:  2014-10-16

7.  Missing lateral relationships in top-level concepts of an ontology.

Authors:  Ling Zheng; Yan Chen; Hua Min; P Lloyd Hildebrand; Hao Liu; Michael Halper; James Geller; Sherri de Coronado; Yehoshua Perl
Journal:  BMC Med Inform Decis Mak       Date:  2020-12-15       Impact factor: 2.796

8.  Outlier concepts auditing methodology for a large family of biomedical ontologies.

Authors:  Ling Zheng; Hua Min; Yan Chen; Vipina Keloth; James Geller; Yehoshua Perl; George Hripcsak
Journal:  BMC Med Inform Decis Mak       Date:  2020-12-15       Impact factor: 2.796

  8 in total

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