Literature DB >> 18988018

Flexi vector cloning.

Paul G Blommel1, Peter A Martin, Kory D Seder, Russell L Wrobel, Brian G Fox.   

Abstract

A protocol for ligation-dependent cloning using the Flexi Vector method in a 96-well format is described. The complete protocol includes PCR amplification of the desired gene to append Flexi Vector cloning sequences, restriction digestion of the PCR products, ligation of the digested PCR products into a similarly digested acceptor vector, transformation and growth of host cells, analysis of the transformed clones, and storage of a sequence-verified clone. The protocol also includes transfer of the sequence-verified clones into another Flexi Vector plasmid backbone. Smaller numbers of cloning reactions can be undertaken by appropriate scaling of the indicated reaction volumes.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 18988018      PMCID: PMC5957505          DOI: 10.1007/978-1-59745-196-3_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  19 in total

1.  Structural genomics in North America.

Authors:  T C Terwilliger
Journal:  Nat Struct Biol       Date:  2000-11

2.  The P1' specificity of tobacco etch virus protease.

Authors:  Rachel B Kapust; József Tözsér; Terry D Copeland; David S Waugh
Journal:  Biochem Biophys Res Commun       Date:  2002-06-28       Impact factor: 3.575

3.  High-throughput cloning for proteomics research.

Authors:  Sharon A Doyle
Journal:  Methods Mol Biol       Date:  2005

Review 4.  Genomics of host-pathogen interactions.

Authors:  Dirk Schnappinger
Journal:  Prog Drug Res       Date:  2007

Review 5.  The impact of structural genomics: expectations and outcomes.

Authors:  John-Marc Chandonia; Steven E Brenner
Journal:  Science       Date:  2006-01-20       Impact factor: 47.728

6.  Enzyme free cloning for high throughput gene cloning and expression.

Authors:  Rob N de Jong; Mark A Daniëls; Rob Kaptein; Gert E Folkers
Journal:  J Struct Funct Genomics       Date:  2007-02-13

7.  High-throughput purification and quality assurance of Arabidopsis thaliana proteins for eukaryotic structural genomics.

Authors:  Won Bae Jeon; David J Aceti; Craig A Bingman; Frank C Vojtik; Andrew C Olson; Jason M Ellefson; Janet E McCombs; Hassan K Sreenath; Paul G Blommel; Kory D Seder; Brendan T Burns; Holalkere V Geetha; Amy C Harms; Grzegorz Sabat; Michael R Sussman; Brian G Fox; George N Phillips
Journal:  J Struct Funct Genomics       Date:  2005

Review 8.  Clinical proteomics: new trends for protein microarrays.

Authors:  K-F Becker; V Metzger; S Hipp; H Höfler
Journal:  Curr Med Chem       Date:  2006       Impact factor: 4.530

9.  Functional proteomics approach to investigate the biological activities of cDNAs implicated in breast cancer.

Authors:  Abigail E Witt; Lisa M Hines; Nicole L Collins; Yanhui Hu; Ruwanthi N Gunawardane; Donna Moreira; Jacob Raphael; Daniel Jepson; Malvika Koundinya; Andreas Rolfs; Barbara Taron; Steven J Isakoff; Joan S Brugge; Joshua LaBaer
Journal:  J Proteome Res       Date:  2006-03       Impact factor: 4.466

10.  Identifying the future needs for long-term USDA efforts in agricultural animal genomics.

Authors:  R D Green; M A Qureshi; J A Long; P J Burfening; D L Hamernik
Journal:  Int J Biol Sci       Date:  2007-02-10       Impact factor: 6.580

View more
  14 in total

1.  Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies.

Authors:  David J Aceti; Craig A Bingman; Russell L Wrobel; Ronnie O Frederick; Shin-Ichi Makino; Karl W Nichols; Sarata C Sahu; Lai F Bergeman; Paul G Blommel; Claudia C Cornilescu; Katarzyna A Gromek; Kory D Seder; Soyoon Hwang; John G Primm; Grzegorz Sabat; Frank C Vojtik; Brian F Volkman; Zsolt Zolnai; George N Phillips; John L Markley; Brian G Fox
Journal:  J Struct Funct Genomics       Date:  2015-04-09

2.  Active site and laminarin binding in glycoside hydrolase family 55.

Authors:  Christopher M Bianchetti; Taichi E Takasuka; Sam Deutsch; Hannah S Udell; Eric J Yik; Lai F Bergeman; Brian G Fox
Journal:  J Biol Chem       Date:  2015-03-09       Impact factor: 5.157

3.  Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production.

Authors:  Mike T Veling; Andrew G Reidenbach; Elyse C Freiberger; Nicholas W Kwiecien; Paul D Hutchins; Michael J Drahnak; Adam Jochem; Arne Ulbrich; Matthew J P Rush; Jason D Russell; Joshua J Coon; David J Pagliarini
Journal:  Mol Cell       Date:  2017-12-07       Impact factor: 17.970

4.  Crystal structure of an eIF4G-like protein from Danio rerio.

Authors:  Euiyoung Bae; Eduard Bitto; Craig A Bingman; Jason G McCoy; Gary E Wesenberg; George N Phillips
Journal:  Proteins       Date:  2010-05-15

5.  Structural and functional characterization of CalS11, a TDP-rhamnose 3'-O-methyltransferase involved in calicheamicin biosynthesis.

Authors:  Shanteri Singh; Aram Chang; Kate E Helmich; Craig A Bingman; Russell L Wrobel; Emily T Beebe; Shin-Ichi Makino; David J Aceti; Kevin Dyer; Greg L Hura; Manjula Sunkara; Andrew J Morris; George N Phillips; Jon S Thorson
Journal:  ACS Chem Biol       Date:  2013-05-23       Impact factor: 5.100

6.  Conserved Lipid and Small-Molecule Modulation of COQ8 Reveals Regulation of the Ancient Kinase-like UbiB Family.

Authors:  Andrew G Reidenbach; Zachary A Kemmerer; Deniz Aydin; Adam Jochem; Molly T McDevitt; Paul D Hutchins; Jaime L Stark; Jonathan A Stefely; Thiru Reddy; Alex S Hebert; Emily M Wilkerson; Isabel E Johnson; Craig A Bingman; John L Markley; Joshua J Coon; Matteo Dal Peraro; David J Pagliarini
Journal:  Cell Chem Biol       Date:  2017-11-30       Impact factor: 8.116

7.  Proteins interacting with cloning scars: a source of false positive protein-protein interactions.

Authors:  Charles A S Banks; Gina Boanca; Zachary T Lee; Laurence Florens; Michael P Washburn
Journal:  Sci Rep       Date:  2015-02-23       Impact factor: 4.379

8.  Biochemical properties and atomic resolution structure of a proteolytically processed β-mannanase from cellulolytic Streptomyces sp. SirexAA-E.

Authors:  Taichi E Takasuka; Justin F Acheson; Christopher M Bianchetti; Ben M Prom; Lai F Bergeman; Adam J Book; Cameron R Currie; Brian G Fox
Journal:  PLoS One       Date:  2014-04-07       Impact factor: 3.240

9.  Use of Nanostructure-Initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases.

Authors:  Kai Deng; Taichi E Takasuka; Christopher M Bianchetti; Lai F Bergeman; Paul D Adams; Trent R Northen; Brian G Fox
Journal:  Front Bioeng Biotechnol       Date:  2015-10-27

10.  IRDL cloning: a one-tube, zero-background, easy-to-use, directional cloning method improves throughput in recombinant DNA preparation.

Authors:  Jiancai Wang; Ronghua Xu; Aizhong Liu
Journal:  PLoS One       Date:  2014-09-22       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.