Literature DB >> 16211511

High-throughput purification and quality assurance of Arabidopsis thaliana proteins for eukaryotic structural genomics.

Won Bae Jeon1, David J Aceti, Craig A Bingman, Frank C Vojtik, Andrew C Olson, Jason M Ellefson, Janet E McCombs, Hassan K Sreenath, Paul G Blommel, Kory D Seder, Brendan T Burns, Holalkere V Geetha, Amy C Harms, Grzegorz Sabat, Michael R Sussman, Brian G Fox, George N Phillips.   

Abstract

The Center for Eukaryotic Structural Genomics (CESG) has established procedures for the purification of Arabidopsis proteins in a high-throughput mode. Recombinant proteins were fused with (His)(6)-MBP tags at their N-terminus and expressed in Escherichia coli. Using an automated AKTApurifier system, fusion proteins were initially purified by immobilized metal affinity chromatography (IMAC). After cleavage of (His)(6)-MBP tags by TEV protease, (His)(6)-MBP tags were separated from target proteins by a subtractive 2nd IMAC. As a part of quality assurance, all purified proteins were subjected to MALDI-TOF and ESI mass spectrometry to confirm target identity and integrity, and determine incorporation of seleno-methionine (SeMet) and (15)N and (13)C isotopes. The protocols have been used successfully to provide high quality proteins that are suitable for structural studies by X-ray crystallography and NMR.

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Year:  2005        PMID: 16211511     DOI: 10.1007/s10969-005-1908-7

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  5 in total

1.  Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused.

Authors:  R B Kapust; D S Waugh
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

2.  Structural basis for the substrate specificity of tobacco etch virus protease.

Authors:  Jason Phan; Alexander Zdanov; Artem G Evdokimov; Joseph E Tropea; Howard K Peters; Rachel B Kapust; Mi Li; Alexander Wlodawer; David S Waugh
Journal:  J Biol Chem       Date:  2002-10-10       Impact factor: 5.157

3.  Protocols for production of selenomethionine-labeled proteins in 2-L polyethylene terephthalate bottles using auto-induction medium.

Authors:  Hassan K Sreenath; Craig A Bingman; Blake W Buchan; Kory D Seder; Brendan T Burns; Holalkere V Geetha; Won Bae Jeon; Frank C Vojtik; David J Aceti; Ronnie O Frederick; George N Phillips; Brian G Fox
Journal:  Protein Expr Purif       Date:  2005-04       Impact factor: 1.650

4.  Fluorescence anisotropy assay for proteolysis of specifically labeled fusion proteins.

Authors:  Paul G Blommel; Brian G Fox
Journal:  Anal Biochem       Date:  2005-01-01       Impact factor: 3.365

5.  Results from high-throughput DNA cloning of Arabidopsis thaliana target genes using site-specific recombination.

Authors:  Sandy Thao; Qin Zhao; Todd Kimball; Eric Steffen; Paul G Blommel; Megan Riters; Craig S Newman; Brian G Fox; Russell L Wrobel
Journal:  J Struct Funct Genomics       Date:  2005-03-02
  5 in total
  42 in total

1.  Structural characterization of human Uch37.

Authors:  Sethe E Burgie; Craig A Bingman; Ameet B Soni; George N Phillips
Journal:  Proteins       Date:  2011-09-26

2.  Structure and dynamics of UDP-glucose pyrophosphorylase from Arabidopsis thaliana with bound UDP-glucose and UTP.

Authors:  Jason G McCoy; Eduard Bitto; Craig A Bingman; Gary E Wesenberg; Ryan M Bannen; Dmitry A Kondrashov; George N Phillips
Journal:  J Mol Biol       Date:  2006-11-21       Impact factor: 5.469

3.  Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana.

Authors:  Simon T M Allard; Craig A Bingman; Kenneth A Johnson; Gary E Wesenberg; Eduard Bitto; Won Bae Jeon; George N Phillips
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-30

4.  Kinetic and structural investigations into the allosteric and pH effect on the substrate specificity of human epithelial 15-lipoxygenase-2.

Authors:  Netra Joshi; Eric K Hoobler; Steven Perry; Giovanni Diaz; Brian Fox; Theodore R Holman
Journal:  Biochemistry       Date:  2013-10-30       Impact factor: 3.162

5.  PHYTOCHROME INTERACTING FACTOR1 Enhances the E3 Ligase Activity of CONSTITUTIVE PHOTOMORPHOGENIC1 to Synergistically Repress Photomorphogenesis in Arabidopsis.

Authors:  Xiaosa Xu; Inyup Paik; Ling Zhu; Qingyun Bu; Xi Huang; Xing Wang Deng; Enamul Huq
Journal:  Plant Cell       Date:  2014-05-23       Impact factor: 11.277

6.  NMR spectroscopy as a tool for the rapid assessment of the conformation of GST-fusion proteins.

Authors:  Chu Kong Liew; Roland Gamsjaeger; Robyn E Mansfield; Joel P Mackay
Journal:  Protein Sci       Date:  2008-06-12       Impact factor: 6.725

7.  Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein.

Authors:  Jikui Song; Robert C Tyler; Russell L Wrobel; Ronnie O Frederick; Frank C Vojtek; Won Bae Jeon; Min S Lee; John L Markley
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

8.  Flexi vector cloning.

Authors:  Paul G Blommel; Peter A Martin; Kory D Seder; Russell L Wrobel; Brian G Fox
Journal:  Methods Mol Biol       Date:  2009

9.  Crystal structure of the protein from Arabidopsis thaliana gene At5g06450, a putative DnaQ-like exonuclease domain-containing protein with homohexameric assembly.

Authors:  David W Smith; Mi Ra Han; Joon Sung Park; Kyung Rok Kim; Taeho Yeom; Ji Yeon Lee; Do Jin Kim; Craig A Bingman; Hyun-Jung Kim; Kyubong Jo; Byung Woo Han; George N Phillips
Journal:  Proteins       Date:  2013-06-17

10.  Structural basis for RNA recognition by a type II poly(A)-binding protein.

Authors:  Jikui Song; Jered V McGivern; Karl W Nichols; John L Markley; Michael D Sheets
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-29       Impact factor: 11.205

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