Literature DB >> 18984699

Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'.

Yukiyo Fukunaga1, Midori Kurahashi, Kensuke Yanagi, Akira Yokota, Shigeaki Harayama.   

Abstract

Strain FYK2218(T) was isolated from a specimen of the chiton Acanthopleura japonica, which had been collected from a beach on the Boso peninsula in Japan. Phylogenetic analyses based on 16S rRNA gene sequences revealed that the strain belonged to the phylum 'Acidobacteria'. The most closely related type strains to strain FYK2218(T) were Holophaga foetida TMBS4(T) (83.6 % 16S rRNA gene sequence similarity) and Geothrix fermentans H-5(T) (83.6 %) in subdivision 8 of the 'Acidobacteria'. Cells of FYK2218(T) were motile, rod-shaped, Gram-negative, mesophilic and strictly aerobic. The G+C content of the strain was 56.7 mol%. The strain had isoprenoid quinones MK-6 and MK-7 as major components. Major fatty acids of the strain were iso-C(15 : 0), iso-C(17 : 0), C(16 : 0) and C(20 : 5)omega3c (cis-5,8,11,14,17-eicosapentaenoic acid). From the taxonomic data obtained in this study, it is proposed that the new marine isolate be placed into a novel genus and species named Acanthopleuribacter pedis gen. nov., sp. nov. within the new family, order and class Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov. and Holophagae classis nov. The family Holophagaceae fam. nov. is also described. The type strain of Acanthopleuribacter pedis is FYK2218(T) (=NBRC 101209(T) =KCTC 12899(T)).

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18984699     DOI: 10.1099/ijs.0.65589-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  20 in total

1.  13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Ellen C Hopmans; Johan W H Weijers; Bärbel U Foesel; Jörg Overmann; Svetlana N Dedysh
Journal:  Appl Environ Microbiol       Date:  2011-04-22       Impact factor: 4.792

2.  Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria.

Authors:  Stephanie A Eichorst; Cheryl R Kuske; Thomas M Schmidt
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

3.  Thermotomaculum hydrothermale gen. nov., sp. nov., a novel heterotrophic thermophile within the phylum Acidobacteria from a deep-sea hydrothermal vent chimney in the Southern Okinawa Trough.

Authors:  Hiroshi Izumi; Takuro Nunoura; Masayuki Miyazaki; Sayaka Mino; Tomohiro Toki; Ken Takai; Yoshihiko Sako; Tomoo Sawabe; Satoshi Nakagawa
Journal:  Extremophiles       Date:  2012-01-03       Impact factor: 2.395

Review 4.  Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).

Authors:  Thomas Cavalier-Smith; Ema E-Yung Chao
Journal:  Protoplasma       Date:  2020-01-03       Impact factor: 3.356

5.  Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Ellen C Hopmans; Bärbel U Foesel; Pia K Wüst; Jörg Overmann; Marcus Tank; Donald A Bryant; Peter F Dunfield; Karen Houghton; Matthew B Stott
Journal:  Appl Environ Microbiol       Date:  2014-06-13       Impact factor: 4.792

6.  Editorial: Acidobacteria - Towards Unraveling the Secrets of a Widespread, Though Enigmatic, Phylum.

Authors:  Katharina J Huber; Michael Pester; Stephanie A Eichorst; Acacio A Navarrete; Bärbel U Foesel
Journal:  Front Microbiol       Date:  2022-06-24       Impact factor: 6.064

7.  Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076.

Authors:  Jean F Challacombe; Stephanie A Eichorst; Loren Hauser; Miriam Land; Gary Xie; Cheryl R Kuske
Journal:  PLoS One       Date:  2011-09-15       Impact factor: 3.240

8.  Cultivating uncultured bacteria from northern wetlands: knowledge gained and remaining gaps.

Authors:  Svetlana N Dedysh
Journal:  Front Microbiol       Date:  2011-09-16       Impact factor: 5.640

9.  Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).

Authors:  Iain Anderson; Brittany Held; Alla Lapidus; Matt Nolan; Susan Lucas; Hope Tice; Tijana Glavina Del Rio; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Evelyne-Marie Brambilla; Manfred Rohde; Stefan Spring; Markus Göker; John C Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Stand Genomic Sci       Date:  2012-05-04

10.  Mobile genetic elements in the bacterial phylum Acidobacteria.

Authors:  Jean Challacombe; Cheryl Kuske
Journal:  Mob Genet Elements       Date:  2012-07-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.