Literature DB >> 18983935

Toward scalable parts families for predictable design of biological circuits.

Julius B Lucks1, Lei Qi, Weston R Whitaker, Adam P Arkin.   

Abstract

Our current ability to engineer biological circuits is hindered by design cycles that are costly in terms of time and money, with constructs failing to operate as desired, or evolving away from the desired function once deployed. Synthetic biologists seek to understand biological design principles and use them to create technologies that increase the efficiency of the genetic engineering design cycle. Central to the approach is the creation of biological parts--encapsulated functions that can be composited together to create new pathways with predictable behaviors. We define five desirable characteristics of biological parts--independence, reliability, tunability, orthogonality and composability, and review studies of small natural and synthetic biological circuits that provide insights into each of these characteristics. We propose that the creation of appropriate sets of families of parts with these properties is a prerequisite for efficient, predictable engineering of new function in cells and will enable a large increase in the sophistication of genetic engineering applications.

Mesh:

Year:  2008        PMID: 18983935     DOI: 10.1016/j.mib.2008.10.002

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  41 in total

1.  Rationally designed families of orthogonal RNA regulators of translation.

Authors:  Vivek K Mutalik; Lei Qi; Joao C Guimaraes; Julius B Lucks; Adam P Arkin
Journal:  Nat Chem Biol       Date:  2012-03-25       Impact factor: 15.040

2.  Distributed biological computation with multicellular engineered networks.

Authors:  Sergi Regot; Javier Macia; Núria Conde; Kentaro Furukawa; Jimmy Kjellén; Tom Peeters; Stefan Hohmann; Eulàlia de Nadal; Francesc Posas; Ricard Solé
Journal:  Nature       Date:  2010-12-08       Impact factor: 49.962

Review 3.  Opportunities for microfluidic technologies in synthetic biology.

Authors:  Shelly Gulati; Vincent Rouilly; Xize Niu; James Chappell; Richard I Kitney; Joshua B Edel; Paul S Freemont; Andrew J deMello
Journal:  J R Soc Interface       Date:  2009-05-27       Impact factor: 4.118

Review 4.  Genome engineering.

Authors:  Peter A Carr; George M Church
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

Review 5.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

6.  Versatile RNA-sensing transcriptional regulators for engineering genetic networks.

Authors:  Julius B Lucks; Lei Qi; Vivek K Mutalik; Denise Wang; Adam P Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-09       Impact factor: 11.205

7.  Regulation of transcription by unnatural amino acids.

Authors:  Chang C Liu; Lei Qi; Charles Yanofsky; Adam P Arkin
Journal:  Nat Biotechnol       Date:  2011-01-16       Impact factor: 54.908

8.  A modular positive feedback-based gene amplifier.

Authors:  Goutam J Nistala; Kang Wu; Christopher V Rao; Kaustubh D Bhalerao
Journal:  J Biol Eng       Date:  2010-02-26       Impact factor: 4.355

9.  Synthetic biology: ethical ramifications 2009.

Authors:  Paul Rabinow; Gaymon Bennett
Journal:  Syst Synth Biol       Date:  2009-10-10

Review 10.  Toward engineering synthetic microbial metabolism.

Authors:  George H McArthur; Stephen S Fong
Journal:  J Biomed Biotechnol       Date:  2009-12-14
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