Literature DB >> 18981470

Noncoding RNA control of the making and breaking of sugars.

Boris Görke1, Jörg Vogel.   

Abstract

Noncoding RNA regulators have been implicated in almost all imaginable cellular processes. Here we review how regulatory small RNAs such as Spot42, SgrS, GlmY, and GlmZ and a cis-encoded ribozyme in glmS mRNA control sugar metabolism. Besides discussing the physiological implications, we show how the study of these molecules contributed to our understanding of the mechanisms and of general principles of RNA-based regulation. These include the post-transcriptional repression or activation of gene expression within polycistronic mRNAs; novel ribonucleoprotein complexes composed of small RNA, Hfq, and/or RNase E; and the hierarchical action of regulatory RNAs.

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Year:  2008        PMID: 18981470     DOI: 10.1101/gad.1717808

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  37 in total

Review 1.  Carbon metabolism of intracellular bacterial pathogens and possible links to virulence.

Authors:  Wolfgang Eisenreich; Thomas Dandekar; Jürgen Heesemann; Werner Goebel
Journal:  Nat Rev Microbiol       Date:  2010-05-10       Impact factor: 60.633

2.  Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA.

Authors:  Armin Resch; Branislav Većerek; Kristina Palavra; Udo Bläsi
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

3.  Regulating the regulator: an RNA decoy acts as an OFF switch for the regulation of an sRNA.

Authors:  Pierre Mandin; Susan Gottesman
Journal:  Genes Dev       Date:  2009-09-01       Impact factor: 11.361

Review 4.  An overview of RNAs with regulatory functions in gram-positive bacteria.

Authors:  Pascale Romby; Emmanuelle Charpentier
Journal:  Cell Mol Life Sci       Date:  2009-10-27       Impact factor: 9.261

5.  Mechanisms of Evolutionary Innovation Point to Genetic Control Logic as the Key Difference Between Prokaryotes and Eukaryotes.

Authors:  William Bains; Dirk Schulze-Makuch
Journal:  J Mol Evol       Date:  2015-07-25       Impact factor: 2.395

6.  Crystallization and preliminary X-ray diffraction analysis of YhbJ from Escherichia coli, a key protein involved in the GlmYZ sRNA regulatory cascade.

Authors:  Marcus Resch; Yvonne Göpel; Boris Görke; Ralf Ficner
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-01-30

Review 7.  Regulatory RNAs in bacteria.

Authors:  Lauren S Waters; Gisela Storz
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

8.  Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays.

Authors:  Ranjit Kumar; Pratik Shah; Edwin Swiatlo; Shane C Burgess; Mark L Lawrence; Bindu Nanduri
Journal:  BMC Genomics       Date:  2010-06-03       Impact factor: 3.969

9.  Structure of Escherichia coli Hfq bound to polyriboadenylate RNA.

Authors:  Todd M Link; Poul Valentin-Hansen; Richard G Brennan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-04       Impact factor: 11.205

10.  In vivo expression and purification of aptamer-tagged small RNA regulators.

Authors:  Nelly Said; Renate Rieder; Robert Hurwitz; Jochen Deckert; Henning Urlaub; Jörg Vogel
Journal:  Nucleic Acids Res       Date:  2009-09-02       Impact factor: 16.971

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