Literature DB >> 18978081

Selective extraction of bacterial DNA from the surfaces of macroalgae.

Catherine Burke1, Staffan Kjelleberg, Torsten Thomas.   

Abstract

A novel method has been developed for the selective extraction of DNA from surface-associated bacterial communities from the two model marine benthic algae Ulva australis and Delisea pulchra. The extracted DNA had no detectable contamination with host DNA, was recovered in high yield and quality, and was representative of the bacterial community on the algal surfaces. The DNA is suitable for a variety of subsequent applications, including the construction of large-insert clone libraries and metagenomic sequencing.

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Year:  2008        PMID： 18978081      PMCID： PMC2612226          DOI： 10.1128/AEM.01630-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  21 in total

1.  Lateral gene transfer and phylogenetic assignment of environmental fosmid clones.

Authors:  Camilla L Nesbø; Yan Boucher; Marlena Dlutek; W Ford Doolittle
Journal:  Environ Microbiol       Date:  2005-12       Impact factor: 5.491

2.  Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria.

Authors:  Joseph J Grzymski; Brandon J Carter; Edward F DeLong; Robert A Feldman; Amir Ghadiri; Alison E Murray
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792

Review 3.  Unlocking the diversity and biotechnological potential of marine surface associated microbial communities.

Authors:  Suhelen Egan; Torsten Thomas; Staffan Kjelleberg
Journal:  Curr Opin Microbiol       Date:  2008-06-02       Impact factor: 7.934

4.  Diversity of polyketide synthase genes from bacteria associated with the marine sponge Pseudoceratina clavata: culture-dependent and culture-independent approaches.

Authors:  Tae Kyung Kim; John A Fuerst
Journal:  Environ Microbiol       Date:  2006-08       Impact factor: 5.491

Review 5.  Epibiotic microorganisms on copepods and other marine crustaceans.

Authors:  K R Carman; F C Dobbs
Journal:  Microsc Res Tech       Date:  1997-04-15       Impact factor: 2.769

6.  Effect of marine bacterial isolates on the growth and morphology of axenic plantlets of the green alga Ulva linza.

Authors:  Katrina Marshall; Ian Joint; Maureen E Callow; James A Callow
Journal:  Microb Ecol       Date:  2006-08-02       Impact factor: 4.552

7.  A CARD-FISH protocol for the identification and enumeration of epiphytic bacteria on marine algae.

Authors:  Niina A Tujula; Carola Holmström; Marc Mussmann; Rudolf Amann; Staffan Kjelleberg; Gregory R Crocetti
Journal:  J Microbiol Methods       Date:  2005-10-10       Impact factor: 2.363

8.  Uncultured Archaea in a hydrothermal microbial assemblage: phylogenetic diversity and characterization of a genome fragment from a euryarchaeote.

Authors:  Hélène Moussard; David Moreira; Marie-Anne Cambon-Bonavita; Purificación López-García; Christian Jeanthon
Journal:  FEMS Microbiol Ecol       Date:  2006-09       Impact factor: 4.194

9.  Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment.

Authors:  Fredrik Hårdeman; Sara Sjöling
Journal:  FEMS Microbiol Ecol       Date:  2007-02       Impact factor: 4.194

10.  Algae acquire vitamin B12 through a symbiotic relationship with bacteria.

Authors:  Martin T Croft; Andrew D Lawrence; Evelyne Raux-Deery; Martin J Warren; Alison G Smith
Journal:  Nature       Date:  2005-11-03       Impact factor: 49.962
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  20 in total

1.  Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis.

Authors:  Catherine Burke; Torsten Thomas; Matt Lewis; Peter Steinberg; Staffan Kjelleberg
Journal:  ISME J       Date:  2010-11-04       Impact factor: 10.302

2.  Identification and characterization of a halotolerant, cold-active marine endo-β-1,4-glucanase by using functional metagenomics of seaweed-associated microbiota.

Authors:  Marjolaine Martin; Sophie Biver; Sébastien Steels; Tristan Barbeyron; Murielle Jam; Daniel Portetelle; Gurvan Michel; Micheline Vandenbol
Journal:  Appl Environ Microbiol       Date:  2014-06-06       Impact factor: 4.792

3.  Bacterial community assembly based on functional genes rather than species.

Authors:  Catherine Burke; Peter Steinberg; Doug Rusch; Staffan Kjelleberg; Torsten Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

4.  Shifts in Bacterial Diversity During the Spontaneous Fermentation of Maize Meal as Revealed by Targeted Amplicon Sequencing.

Authors:  Grace Nkechinyere Ijoma; Ramganesh Selvarajan; Tracy Muntete; Henry Joseph Oduor Ogola; Memory Tekere; Tonderayi Matambo
Journal:  Curr Microbiol       Date:  2021-02-23       Impact factor: 2.188

5.  Metagenomics - a guide from sampling to data analysis.

Authors:  Torsten Thomas; Jack Gilbert; Folker Meyer
Journal:  Microb Inform Exp       Date:  2012-02-09

6.  Selective DNA and Protein Isolation From Marine Macrophyte Surfaces.

Authors:  Marino Korlević; Marsej Markovski; Zihao Zhao; Gerhard J Herndl; Mirjana Najdek
Journal:  Front Microbiol       Date:  2021-05-24       Impact factor: 5.640

7.  The green seaweed Ulva: a model system to study morphogenesis.

Authors:  Thomas Wichard; Bénédicte Charrier; Frédéric Mineur; John H Bothwell; Olivier De Clerck; Juliet C Coates
Journal:  Front Plant Sci       Date:  2015-02-19       Impact factor: 5.753

8.  Copper tolerance and distribution of epibiotic bacteria associated with giant kelp Macrocystis pyrifera in southern California.

Authors:  Julia Busch; Juliana Ribeiro Nascimento; Ana Carolina Rubem Magalhães; Bas E Dutilh; Elizabeth Dinsdale
Journal:  Ecotoxicology       Date:  2015-04-18       Impact factor: 2.823

9.  The Ecology of Microbial Communities Associated with Macrocystis pyrifera.

Authors:  Vanessa K Michelou; J Gregory Caporaso; Rob Knight; Stephen R Palumbi
Journal:  PLoS One       Date:  2013-06-19       Impact factor: 3.240

10.  Community structure and functional gene profile of bacteria on healthy and diseased thalli of the red seaweed Delisea pulchra.

Authors:  Neil Fernandes; Peter Steinberg; Doug Rusch; Staffan Kjelleberg; Torsten Thomas
Journal:  PLoS One       Date:  2012-12-03       Impact factor: 3.240
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