Literature DB >> 18958301

WND-CHARM: Multi-purpose image classification using compound image transforms.

Nikita Orlov1, Lior Shamir, Tomasz Macura, Josiah Johnston, D Mark Eckley, Ilya G Goldberg.   

Abstract

We describe a multi-purpose image classifier that can be applied to a wide variety of image classification tasks without modifications or fine-tuning, and yet provide classification accuracy comparable to state-of-the-art task-specific image classifiers. The proposed image classifier first extracts a large set of 1025 image features including polynomial decompositions, high contrast features, pixel statistics, and textures. These features are computed on the raw image, transforms of the image, and transforms of transforms of the image. The feature values are then used to classify test images into a set of pre-defined image classes. This classifier was tested on several different problems including biological image classification and face recognition. Although we cannot make a claim of universality, our experimental results show that this classifier performs as well or better than classifiers developed specifically for these image classification tasks. Our classifier's high performance on a variety of classification problems is attributed to (i) a large set of features extracted from images; and (ii) an effective feature selection and weighting algorithm sensitive to specific image classification problems. The algorithms are available for free download from openmicroscopy.org.

Entities:  

Year:  2008        PMID: 18958301      PMCID: PMC2573471          DOI: 10.1016/j.patrec.2008.04.013

Source DB:  PubMed          Journal:  Pattern Recognit Lett        ISSN: 0167-8655            Impact factor:   3.756


  12 in total

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Authors:  M V Boland; R F Murphy
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

2.  Informatics and quantitative analysis in biological imaging.

Authors:  Jason R Swedlow; Ilya Goldberg; Erik Brauner; Peter K Sorger
Journal:  Science       Date:  2003-04-04       Impact factor: 47.728

3.  A fully automatic and robust brain MRI tissue classification method.

Authors:  Chris A Cocosco; Alex P Zijdenbos; Alan C Evans
Journal:  Med Image Anal       Date:  2003-12       Impact factor: 8.545

4.  A face and palmprint recognition approach based on discriminant DCT feature extraction.

Authors:  Xiao-Yuan Jing; David Zhang
Journal:  IEEE Trans Syst Man Cybern B Cybern       Date:  2004-12

5.  Connected shape-size pattern spectra for rotation and scale-invariant classification of gray-scale images.

Authors:  Erik R Urbach; Jos B T M Roerdink; Michael H F Wilkinson
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2007-02       Impact factor: 6.226

6.  Adaptive Markov modeling for mutual-information-based, unsupervised MRI brain-tissue classification.

Authors:  Suyash P Awate; Tolga Tasdizen; Norman Foster; Ross T Whitaker
Journal:  Med Image Anal       Date:  2006-08-21       Impact factor: 8.545

7.  Support vector machines for histogram-based image classification.

Authors:  O Chapelle; P Haffner; V N Vapnik
Journal:  IEEE Trans Neural Netw       Date:  1999

8.  Eigenfaces for recognition.

Authors:  M Turk; A Pentland
Journal:  J Cogn Neurosci       Date:  1991       Impact factor: 3.225

9.  Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images.

Authors:  M V Boland; M K Markey; R F Murphy
Journal:  Cytometry       Date:  1998-11-01

10.  Automated interpretation of protein subcellular location patterns: implications for early cancer detection and assessment.

Authors:  Robert F Murphy
Journal:  Ann N Y Acad Sci       Date:  2004-05       Impact factor: 5.691

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  66 in total

1.  Advanced hardware and software tools for fast multidimensional imaging of living cells.

Authors:  Jason R Swedlow
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-31       Impact factor: 11.205

2.  Progression analysis and stage discovery in continuous physiological processes using image computing.

Authors:  Lior Shamir; Salim Rahimi; Nikita Orlov; Luigi Ferrucci; Ilya G Goldberg
Journal:  EURASIP J Bioinform Syst Biol       Date:  2010-06-30

3.  Predicting early symptomatic osteoarthritis in the human knee using machine learning classification of magnetic resonance images from the osteoarthritis initiative.

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Journal:  J Orthop Res       Date:  2017-03-23       Impact factor: 3.494

4.  Molecular characterization of the transition to mid-life in Caenorhabditis elegans.

Authors:  D Mark Eckley; Salim Rahimi; Sandra Mantilla; Nikita V Orlov; Christopher E Coletta; Mark A Wilson; Wendy B Iser; John D Delaney; Yongqing Zhang; William Wood; Kevin G Becker; Catherine A Wolkow; Ilya G Goldberg
Journal:  Age (Dordr)       Date:  2012-05-20

5.  Evaluation of Face Datasets as Tools for Assessing the Performance of Face Recognition Methods.

Authors:  Lior Shamir
Journal:  Int J Comput Vis       Date:  2008       Impact factor: 7.410

6.  AUTOMATED COLITIS DETECTION FROM ENDOSCOPIC BIOPSIES AS A TISSUE SCREENING TOOL IN DIAGNOSTIC PATHOLOGY.

Authors:  Michael T McCann; Ramamurthy Bhagavatula; Matthew C Fickus; John A Ozolek; Jelena Kovačević
Journal:  Proc Int Conf Image Proc       Date:  2012

7.  Automated Neuron Detection in High-Content Fluorescence Microscopy Images Using Machine Learning.

Authors:  Gadea Mata; Miroslav Radojević; Carlos Fernandez-Lozano; Ihor Smal; Niels Werij; Miguel Morales; Erik Meijering; Julio Rubio
Journal:  Neuroinformatics       Date:  2019-04

8.  Spatial Heterogeneity Analysis in Evaluation of Cell Viability and Apoptosis for Colorectal Cancer Cells.

Authors:  Aydin Saribudak; Herman Kucharavy; Karen Hubbard; Muharrem Umit Uyar
Journal:  IEEE J Transl Eng Health Med       Date:  2016-06-22       Impact factor: 3.316

9.  IICBU 2008: a proposed benchmark suite for biological image analysis.

Authors:  Lior Shamir; Nikita Orlov; David Mark Eckley; Tomasz J Macura; Ilya G Goldberg
Journal:  Med Biol Eng Comput       Date:  2008-07-31       Impact factor: 2.602

10.  Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening.

Authors:  Vebjorn Ljosa; Anne E Carpenter
Journal:  PLoS Comput Biol       Date:  2009-12-24       Impact factor: 4.475

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