Literature DB >> 27574578

Spatial Heterogeneity Analysis in Evaluation of Cell Viability and Apoptosis for Colorectal Cancer Cells.

Aydin Saribudak1, Herman Kucharavy2, Karen Hubbard2, Muharrem Umit Uyar1.   

Abstract

In evaluation of cell viability and apoptosis, spatial heterogeneity is quantified for cancerous cells cultured in 3-D in vitro cell-based assays under the impact of anti-cancer agents. In 48-h experiments using human colorectal cancer cell lines of HCT-116, SW-620, and SW-480, incubated cells are divided into control and drug administered groups, to be grown in matrigel and FOLFOX solution, respectively. Our 3-D cell tracking and data acquisition system guiding an inverted microscope with a digital camera is utilized to capture bright field and fluorescent images of colorectal cancer cells at multiple time points. Identifying the locations of live and dead cells in captured images, spatial point process and Voronoi tessellation methods are applied to extract morphological features of in vitro cell-based assays. For the former method, spatial heterogeneity is quantified with the second-order functions of Poisson point process, whereas the deviation in the area of Voronoi polygons is computed for the latter. With both techniques, the results indicate that the spatial heterogeneity of live cell locations increases as the viability of in in vitro cell cultures decreases. On the other hand, a decrease is observed for the heterogeneity of dead cell locations with the decrease in cell viability. This relationship between morphological features of in vitro cell-based assays and cell viability can be used for drug efficacy measurements and utilized as a biomarker for 3-D in vitro microenvironment assays.

Entities:  

Keywords:  Cell viability; FOLFOX treatment; Voronoi tessellation; cell apoptosis; colorectal cancer cell lines; in-vitro cell based assays; morphological features; poisson point process; spatial analysis methods; spatial heterogeneity

Year:  2016        PMID: 27574578      PMCID: PMC4993133          DOI: 10.1109/JTEHM.2016.2578331

Source DB:  PubMed          Journal:  IEEE J Transl Eng Health Med        ISSN: 2168-2372            Impact factor:   3.316


  6 in total

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2.  WND-CHARM: Multi-purpose image classification using compound image transforms.

Authors:  Nikita Orlov; Lior Shamir; Tomasz Macura; Josiah Johnston; D Mark Eckley; Ilya G Goldberg
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Review 3.  Three-dimensional cell culture systems and their applications in drug discovery and cell-based biosensors.

Authors:  Rasheena Edmondson; Jessica Jenkins Broglie; Audrey F Adcock; Liju Yang
Journal:  Assay Drug Dev Technol       Date:  2014-05       Impact factor: 1.738

Review 4.  The use of 3-D cultures for high-throughput screening: the multicellular spheroid model.

Authors:  Leoni A Kunz-Schughart; James P Freyer; Ferdinand Hofstaedter; Reinhard Ebner
Journal:  J Biomol Screen       Date:  2004-06

5.  Mathematical models of tumor growth using Voronoi tessellations in pathology slides of kidney cancer.

Authors:  Aydin Saribudak; Stephen Gundry; James Hsieh; M Umit Uyar
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2015-08

6.  5-Fluorouracil sensitizes colorectal tumor cells towards double stranded DNA breaks by interfering with homologous recombination repair.

Authors:  Upadhyayula Sai Srinivas; Jerzy Dyczkowski; Tim Beißbarth; Jochen Gaedcke; Wael Y Mansour; Kerstin Borgmann; Matthias Dobbelstein
Journal:  Oncotarget       Date:  2015-05-20
  6 in total

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