Literature DB >> 18957700

LINE-like retrotransposition in Saccharomyces cerevisiae.

Chun Dong1, Russell T Poulter, Jeffrey S Han.   

Abstract

Over one-third of human genome sequence is a product of non-LTR retrotransposition. The retrotransposon that currently drives this process in humans is the highly abundant LINE-1 (L1) element. Despite the ubiquitous nature of L1's in mammals, we still lack a complete mechanistic understanding of the L1 replication cycle and how it is regulated. To generate a genetically amenable model for non-LTR retrotransposition, we have reengineered the Zorro3 retrotransposon, an L1 homolog from Candida albicans, for use in the budding yeast Saccharomyces cerevisiae. We found that S. cerevisiae, which has no endogenous L1 homologs or remnants, can still support Zorro3 retrotransposition. Analysis of Zorro3 mutants and insertion structures suggest that this is authentic L1-like retrotransposition with remarkable resemblance to mammalian L1-mediated events. This suggests that S. cerevisiae has unexpectedly retained the basal host machinery required for L1 retrotransposition. This model will also serve as a powerful system to study the cell biology of L1 elements and for the genetic identification and characterization of cellular factors involved in L1 retrotransposition.

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Year:  2008        PMID: 18957700      PMCID: PMC2621178          DOI: 10.1534/genetics.108.096636

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  67 in total

1.  The age and evolution of non-LTR retrotransposable elements.

Authors:  H S Malik; W D Burke; T H Eickbush
Journal:  Mol Biol Evol       Date:  1999-06       Impact factor: 16.240

2.  Genomic deletions created upon LINE-1 retrotransposition.

Authors:  Nicolas Gilbert; Sheila Lutz-Prigge; John V Moran
Journal:  Cell       Date:  2002-08-09       Impact factor: 41.582

3.  Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells.

Authors:  S L Martin
Journal:  Mol Cell Biol       Date:  1991-09       Impact factor: 4.272

4.  Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.

Authors:  Adam M Deutschbauer; Daniel F Jaramillo; Michael Proctor; Jochen Kumm; Maureen E Hillenmeyer; Ronald W Davis; Corey Nislow; Guri Giaever
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

5.  The human LINE-1 reverse transcriptase:effect of deletions outside the common reverse transcriptase domain.

Authors:  A P Clements; M F Singer
Journal:  Nucleic Acids Res       Date:  1998-08-01       Impact factor: 16.971

6.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

7.  Transposition and gene disruption in the male germline of the mouse.

Authors:  A J Dupuy; S Fritz; D A Largaespada
Journal:  Genesis       Date:  2001-06       Impact factor: 2.487

8.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

9.  Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis.

Authors:  Katherine M Nyswaner; Mary Ann Checkley; Ming Yi; Robert M Stephens; David J Garfinkel
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

10.  New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae.

Authors:  A Wach; A Brachat; R Pöhlmann; P Philippsen
Journal:  Yeast       Date:  1994-12       Impact factor: 3.239

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  13 in total

Review 1.  Pathogenesis of chagas' disease: parasite persistence and autoimmunity.

Authors:  Antonio R L Teixeira; Mariana M Hecht; Maria C Guimaro; Alessandro O Sousa; Nadjar Nitz
Journal:  Clin Microbiol Rev       Date:  2011-07       Impact factor: 26.132

2.  Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions.

Authors:  Jeffrey S Han
Journal:  Mob DNA       Date:  2010-05-12

3.  Induction of long interspersed nucleotide element-1 (L1) retrotransposition by 6-formylindolo[3,2-b]carbazole (FICZ), a tryptophan photoproduct.

Authors:  Noriyuki Okudaira; Kenta Iijima; Takayoshi Koyama; Yuzuru Minemoto; Shigeyuki Kano; Akio Mimori; Yukihito Ishizaka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-17       Impact factor: 11.205

4.  Characterization of OsMIK in a rice mutant with reduced phytate content reveals an insertion of a rearranged retrotransposon.

Authors:  Hai-Jun Zhao; Hai-Rui Cui; Xiu-Hong Xu; Yuan-Yuan Tan; Jun-Jie Fu; Guo-Zhen Liu; Yves Poirier; Qing-Yao Shu
Journal:  Theor Appl Genet       Date:  2013-09-17       Impact factor: 5.699

Review 5.  The L1 retrotransposition assay: a retrospective and toolkit.

Authors:  Sanjida H Rangwala; Haig H Kazazian
Journal:  Methods       Date:  2009-05-04       Impact factor: 3.608

Review 6.  The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.

Authors:  Sandra R Richardson; Aurélien J Doucet; Huira C Kopera; John B Moldovan; José Luis Garcia-Perez; John V Moran
Journal:  Microbiol Spectr       Date:  2015-04

7.  Intrinsic immunity against retrotransposons by APOBEC cytidine deaminases.

Authors:  Atsushi Koito; Terumasa Ikeda
Journal:  Front Microbiol       Date:  2013-02-20       Impact factor: 5.640

8.  Circular retrotransposition products generated by a LINE retrotransposon.

Authors:  Jeffrey S Han; Shirley Shao
Journal:  Nucleic Acids Res       Date:  2012-09-12       Impact factor: 16.971

9.  Modes of retrotransposition of long interspersed element-1 by environmental factors.

Authors:  Yukihito Ishizaka; Noriyuki Okudaira; Masato Tamura; Kenta Iijima; Mari Shimura; Motohito Goto; Tadashi Okamura
Journal:  Front Microbiol       Date:  2012-05-31       Impact factor: 5.640

10.  The specificity and flexibility of l1 reverse transcription priming at imperfect T-tracts.

Authors:  Clément Monot; Monika Kuciak; Sébastien Viollet; Ashfaq Ali Mir; Caroline Gabus; Jean-Luc Darlix; Gaël Cristofari
Journal:  PLoS Genet       Date:  2013-05-09       Impact factor: 5.917

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