| Literature DB >> 18947427 |
Sharon L R Kardia1, Reagan J Kelly, Mehdi A Keddache, Bruce J Aronow, Gregory A Grabowski, Harvey S Hahn, Karen L Case, Lynne E Wagoner, Gerald W Dorn, Stephen B Liggett.
Abstract
BACKGROUND: Persistent stimulation of cardiac beta1-adrenergic receptors by endogenous norepinephrine promotes heart failure progression. Polymorphisms of this gene are known to alter receptor function or expression, as are polymorphisms of the alpha 2C-adrenergic receptor, which regulates norepinephrine release from cardiac presynaptic nerves. The purpose of this study was to investigate possible synergistic effects of polymorphisms of these two intronless genes (ADRB1 and ADRA2C, respectively) on the risk of death/transplant in heart failure patients.Entities:
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Year: 2008 PMID: 18947427 PMCID: PMC2588439 DOI: 10.1186/1471-2350-9-93
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Descriptive statistics for the heart failure cohort
| Age at onset of heart failure (yrs) | 655 | 53.79 ± 12.73 |
| Follow-up time (yrs) | 655 | 3.16 ± 2.70 |
| Height (cm) | 554 | 172.2 ± 10.06 |
| Weight (kg) | 560 | 85.82 ± 20.73 |
| Left Ventricular Ejection Fraction | 415 | 27.72 ± 13.72 |
| Left Ventricular Mass indexed to Body Surface Area | 456 | 189.14 ± 69.04 |
| Fractional Shortening | 492 | 21.97 ± 11.16 |
| Males | 453 | 69.2 |
| Hypertension | 310 | 47.9 |
| Beta Blocker Use | 455 | 69.6 |
| ACE Inhibitor Use | 550 | 84.0 |
| Had Endpoint: | ||
| Death | 127 | 19.4 |
| Cardiac Transplant | 171 | 26.1 |
| Heart Failure Etiology: | ||
| Dilated Cardiomyopathy | 382 | 58.3 |
| Ischemic Cardiomyopathy | 259 | 39.5 |
| Other | 14 | 2.1 |
Summary of the SNP frequency distributions
| 568 | C | 0.013 | 0.000 | |
| 613 | G | 0.001 | 1.000 | |
| 615 | T | 0.001 | 1.000 | |
| 612 | T | 0.002 | 1.000 | |
| 602 | T | 0.111 | 0.151 | |
| 608 | A | 0.031 | 1.000 | |
| 624 | G | 0.069 | 0.066 | |
| 626 | G | 0.018 | 1.000 | |
| 634 | C | 0.001 | 1.000 | |
| 634 | A | 0.136 | 0.615 | |
| 634 | A | 0.028 | 1.000 | |
| 426 | G | 0.058 | 0.640 | |
| 644 | G | 0.001 | 1.000 | |
| 644 | C | 0.019 | 1.000 | |
| 587 | del | 0.066 | 0.010 | |
| 651 | C | 0.235 | 0.387 | |
| 572 | C | 0.287 | 0.477 | |
| 573 | ins | 0.001 | 1.000 | |
| 593 | T | 0.146 | 0.073 | |
| 593 | T | 0.066 | 1.000 | |
| 608 | C | 0.141 | 0.243 | |
| 643 | A | 0.001 | 1.000 | |
| 644 | A | 0.001 | 1.000 | |
| 644 | A | 0.030 | 0.447 | |
| 637 | C | 0.433 | 0.568 | |
| 607 | G | 0.151 | 0.082 | |
| 608 | C | 0.146 | 0.250 | |
| 579 | A | 0.003 | 1.000 | |
| 580 | C | 0.003 | 1.000 | |
| 627 | C | 0.131 | 0.015 | |
| 584 | G | 0.146 | 0.018 | |
| 587 | T | 0.002 | 1.000 | |
| 557 | G | 0.268 | 0.665 |
Figure 1Kaplan-Meier curve of time from heart failure diagnosis to death or cardiac transplant.
Figure 2A. Linkage disequilibrium among ADRA2C polymorphisms B. Linkage disequilibrium among ADRB1 polymorphisms.
Summary of the significant, false discovery rate adjusted, and cross-validated ADRA2C and ADRB1 polymorphism effects and interactions on age of onset, LVmass, LVEF, and heart failure survival
| Age of Onset | LVMass Adj* | LVEF Adj** | Survival | |||||
| SNP Main Effects | SNP-SNP Interaction | SNP Main Effects | SNP_SNP Interaction | SNP Main Effects | SNP_SNP Interaction | SNP Main Effects | SNP_SNP Interaction | |
| Number of tests | 22 | 209 | 22 | 200 | 22 | 204 | 22 | 231 |
| P < 0.10 | 2 | 24 | 1 | 8 | 2 | 16 | 4 | 50 |
| FDR (<0.30) | 0 | 0 | 0 | 0 | 2 | 0 | 4 | 44 |
| Cross Validation*** | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 10 |
| FDR and Cross-validation | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 6 |
* LVMass was adjusted for age of onset, sex, height, weight, hypertension
** LVEF was adjusted for age of onset, sex
*** For survival analysis, Risk Index was used to cross-validate, P-value for Cox model with Risk Index <0.1 is considered as crossvalidated. For continuous outcomes, 4-fold CV was used. Press-Rsquared >0.005 (SNP univ model) or Press-Rsquared for full model >0 and Press-Rsquared Difference between full model and submodel >0.005 (Epistasis) is considered to be crossvalidated for interaction.
FDR Significant and Cross-Validated Epistatic Effects of ADRA2C and ADRB1 polymorphisms on survival
| TT | 1 | 544 | 0.029 | 0.031 | |||
| TG | 1.34(0.91, 1.95) | 74 | |||||
| GG | n/a | 6 | |||||
| 11 | 1 | 516 | 0.065 | 0.018 | |||
| 10 | 0.51(0.07, 3.64) | 65 | |||||
| 00 | 1.58(1.07, 2.32)* | 6 | |||||
| 00 | AA | n/a | 5 | <0.001 | 0.069 | ||
| 10 | AA | 1.20 (0.74,1.95) | 39 | ||||
| 10 | AG | 5.12 (2.66, 9.88)* | 17 | ||||
| 11 | AA | 1 | 349 | ||||
| 11 | AG | 0.86 (0.59, 1.25) | 108 | ||||
| 11 | GG | 0.70 (0.31, 1.61) | 15 | ||||
| TC | CT | 8.31(3.32, 20.75)* | 7 | <0.001 | <0.001 | ||
| TC | TT | 0.46(0.15, 1.42) | 16 | ||||
| TT | CC | 0.51(0.21,1.24) | 17 | ||||
| TT | CT | 0.88 (0.62,1.26) | 121 | ||||
| TT | TT | 1 | 455 | ||||
| TC | TG | 9.23(3.67,23.16)* | 7 | 0.001 | 0.014 | ||
| TC | TT | 0.61(0.22, 1.64) | 16 | ||||
| TT | GG | 0.61(0.27,1.38) | 18 | ||||
| TT | TG | 0.99 (0.71,1.36) | 137 | ||||
| TT | TT | 1 | 422 | ||||
| GG | AA | n/a | 5 | 0.001 | 0.097 | ||
| TG | AA | 0.99 (0.62,1.61) | 44 | ||||
| TG | AG | 4.59 (2.31,9.12)* | 17 | ||||
| TG | GG | n/a | 2 | ||||
| TT | AA | 1 | 371 | ||||
| TT | AG | 0.85(0.59, 1.22) | 111 | ||||
| TT | GG | 0.61(0.27, 1.38) | 17 | ||||
| GG | CC | n/a | 6 | 0.005 | <0.001 | ||
| TG | CC | 0.95 (0.60, 1.53) | 52 | ||||
| TG | CT | 3.56 (1.80,7.05)* | 18 | ||||
| TT | CC | 1 | 369 | ||||
| TT | CT | 0.84 (0.58,1.21) | 116 | ||||
| TT | TT | 0.62 (0.27, 1.42) | 17 | ||||
| GG | AA | n/a | 6 | 0.010 | <0.001 | ||
| TG | AA | 1.08 (0.68,1.71) | 52 | ||||
| TG | AC | 3.02(1.53,5.97)* | 19 | ||||
| TT | AA | 1 | 379 | ||||
| TT | AC | 0.83(0.58,1.21) | 116 | ||||
| TT | CC | 0.73 (0.32,1.66) | 16 |
* RR is significant at α < 0.05