Literature DB >> 18940668

Distinct structural elements dictate the specificity of the type III pentaketide synthase from Neurospora crassa.

Sheryl B Rubin-Pitel1, Houjin Zhang, Trang Vu, Joseph S Brunzelle, Huimin Zhao, Satish K Nair.   

Abstract

The fungal type III polyketide synthase 2'-oxoalkylresorcylic acid synthase (ORAS) primes with a range of acyl-Coenzyme A thioesters (C4-C20) and extends using malonyl-Coenzyme A to produce pyrones, resorcinols, and resorcylic acids. To gain insight into this unusual substrate specificity and product profile, we have determined the crystal structures of ORAS to 1.75 A resolution, the Phe-252-->Gly site-directed mutant to 2.1 A resolution, and a binary complex of ORAS with eicosanoic acid to 2.0 A resolution. The structures reveal a distinct rearrangement of structural elements near the active site that allows accommodation of long-chain fatty acid esters and a reorientation of the gating mechanism that controls cyclization and polyketide chain length. The roles of these structural elements are further elucidated by characterization of various structure-based site-directed variants. These studies establish an unexpected plasticity to the PKS fold, unanticipated from structural studies of other members of this enzyme family.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18940668      PMCID: PMC2610677          DOI: 10.1016/j.chembiol.2008.08.011

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  30 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Probing plant polyketide biosynthesis.

Authors:  J Schröder
Journal:  Nat Struct Biol       Date:  1999-08

3.  Multiparametric scaling of diffraction intensities.

Authors:  Zbyszek Otwinowski; Dominika Borek; Wladyslaw Majewski; Wladek Minor
Journal:  Acta Crystallogr A       Date:  2003-04-25       Impact factor: 2.290

4.  wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models.

Authors:  A Perrakis; T K Sixma; K S Wilson; V S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-07-01

5.  Miscellaneous algorithms for density modification.

Authors:  K Cowtan; P Main
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-07-01

6.  A plant type III polyketide synthase that produces pentaketide chromone.

Authors:  Ikuro Abe; Yoriko Utsumi; Satoshi Oguro; Hiroyuki Morita; Yukie Sano; Hiroshi Noguchi
Journal:  J Am Chem Soc       Date:  2005-02-09       Impact factor: 15.419

7.  An aldol switch discovered in stilbene synthases mediates cyclization specificity of type III polyketide synthases.

Authors:  Michael B Austin; Marianne E Bowman; Jean-Luc Ferrer; Joachim Schröder; Joseph P Noel
Journal:  Chem Biol       Date:  2004-09

8.  Structural insight into chain-length control and product specificity of pentaketide chromone synthase from Aloe arborescens.

Authors:  Hiroyuki Morita; Shin Kondo; Satoshi Oguro; Hiroshi Noguchi; Shigetoshi Sugio; Ikuro Abe; Toshiyuki Kohno
Journal:  Chem Biol       Date:  2007-04

9.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

10.  Expression and characterization of the type III polyketide synthase 1,3,6,8-tetrahydroxynaphthalene synthase from Streptomyces coelicolor A3(2).

Authors:  Miho Izumikawa; Paul R Shipley; Jörn N Hopke; Thomas O'Hare; Longkuan Xiang; Joseph P Noel; Bradley S Moore
Journal:  J Ind Microbiol Biotechnol       Date:  2003-08-07       Impact factor: 3.346

View more
  16 in total

1.  Alkylresorcinol synthases expressed in Sorghum bicolor root hairs play an essential role in the biosynthesis of the allelopathic benzoquinone sorgoleone.

Authors:  Daniel Cook; Agnes M Rimando; Thomas E Clemente; Joachim Schröder; Franck E Dayan; N P Dhammika Nanayakkara; Zhiqiang Pan; Brice P Noonan; Mark Fishbein; Ikuro Abe; Stephen O Duke; Scott R Baerson
Journal:  Plant Cell       Date:  2010-03-26       Impact factor: 11.277

2.  Structural basis for the one-pot formation of the diarylheptanoid scaffold by curcuminoid synthase from Oryza sativa.

Authors:  Hiroyuki Morita; Kiyofumi Wanibuchi; Hirohiko Nii; Ryohei Kato; Shigetoshi Sugio; Ikuro Abe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

Review 3.  Cyclization of aromatic polyketides from bacteria and fungi.

Authors:  Hui Zhou; Yanran Li; Yi Tang
Journal:  Nat Prod Rep       Date:  2010-03-31       Impact factor: 13.423

4.  LAP6/POLYKETIDE SYNTHASE A and LAP5/POLYKETIDE SYNTHASE B encode hydroxyalkyl α-pyrone synthases required for pollen development and sporopollenin biosynthesis in Arabidopsis thaliana.

Authors:  Sung Soo Kim; Etienne Grienenberger; Benjamin Lallemand; Che C Colpitts; Sun Young Kim; Clarice de Azevedo Souza; Pierrette Geoffroy; Dimitri Heintz; Daniel Krahn; Markus Kaiser; Erich Kombrink; Thierry Heitz; Dae-Yeon Suh; Michel Legrand; Carl J Douglas
Journal:  Plant Cell       Date:  2010-12-30       Impact factor: 11.277

5.  Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis.

Authors:  Etienne Grienenberger; Sung Soo Kim; Benjamin Lallemand; Pierrette Geoffroy; Dimitri Heintz; Clarice de Azevedo Souza; Thierry Heitz; Carl J Douglas; Michel Legrand
Journal:  Plant Cell       Date:  2010-12-30       Impact factor: 11.277

6.  Physcomitrella PpORS, basal to plant type III polyketide synthases in phylogenetic trees, is a very long chain 2'-oxoalkylresorcinol synthase.

Authors:  Sun Young Kim; Che C Colpitts; Gertrud Wiedemann; Christina Jepson; Mehrieh Rahimi; Jordan R Rothwell; Adam D McInnes; Mitsuyasu Hasebe; Ralf Reski; Brian T Sterenberg; Dae-Yeon Suh
Journal:  J Biol Chem       Date:  2012-12-07       Impact factor: 5.157

7.  A structure-based mechanism for benzalacetone synthase from Rheum palmatum.

Authors:  Hiroyuki Morita; Yoshihiko Shimokawa; Michikazu Tanio; Ryohei Kato; Hiroshi Noguchi; Shigetoshi Sugio; Toshiyuki Kohno; Ikuro Abe
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-18       Impact factor: 11.205

8.  Crystal structure of Mycobacterium tuberculosis polyketide synthase 11 (PKS11) reveals intermediates in the synthesis of methyl-branched alkylpyrones.

Authors:  Kuppan Gokulan; Seán E O'Leary; William K Russell; David H Russell; Mallikarjun Lalgondar; Tadhg P Begley; Thomas R Ioerger; James C Sacchettini
Journal:  J Biol Chem       Date:  2013-04-24       Impact factor: 5.157

9.  Structural basis for cyclization specificity of two Azotobacter type III polyketide synthases: a single amino acid substitution reverses their cyclization specificity.

Authors:  Ryutaro Satou; Akimasa Miyanaga; Hiroki Ozawa; Nobutaka Funa; Yohei Katsuyama; Ken-Ichi Miyazono; Masaru Tanokura; Yasuo Ohnishi; Sueharu Horinouchi
Journal:  J Biol Chem       Date:  2013-10-07       Impact factor: 5.157

10.  Bacterial Genome Mining of Enzymatic Tools for Alkyne Biosynthesis.

Authors:  Xuejun Zhu; Michael Su; Kadhirvel Manickam; Wenjun Zhang
Journal:  ACS Chem Biol       Date:  2015-10-12       Impact factor: 5.100

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.