Literature DB >> 18940601

Chaperone-assisted crystallography with DARPins.

Gaby Sennhauser1, Markus G Grütter.   

Abstract

The structure of proteins that are difficult to crystallize can often be solved by forming a noncovalent complex with a helper protein--a crystallization "chaperone." Although several such applications have been described to date, their handling usually is still very laborious. A valuable addition to the present repertoire of binding proteins is the recently developed designed ankyrin repeat protein (DARPin) technology. DARPins are built based on the natural ankyrin repeat protein fold with randomized surface residue positions allowing specific binding to virtually any target protein. The broad potential of these binding proteins for X-ray crystallography is illustrated by five cocrystal structures that have been determined recently comprising target proteins from distinct families, namely a sugar binding protein, two kinases, a caspase, and a membrane protein. This article reviews the opportunities of this technology for structural biology and the structural aspects of the DARPin-protein complexes.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18940601     DOI: 10.1016/j.str.2008.08.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  37 in total

1.  Asymmetry in the homodimeric ABC transporter MsbA recognized by a DARPin.

Authors:  Anshumali Mittal; Simon Böhm; Markus G Grütter; Enrica Bordignon; Markus A Seeger
Journal:  J Biol Chem       Date:  2012-04-20       Impact factor: 5.157

2.  A hot-spot motif characterizes the interface between a designed ankyrin-repeat protein and its target ligand.

Authors:  Luthur Siu-Lun Cheung; Manu Kanwar; Marc Ostermeier; Konstantinos Konstantopoulos
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

3.  Application of protein engineering to enhance crystallizability and improve crystal properties.

Authors:  Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

4.  Biocrystallography: past, present, future.

Authors:  Richard Giegé; Claude Sauter
Journal:  HFSP J       Date:  2010-04-22

5.  Conversion of scFv peptide-binding specificity for crystal chaperone development.

Authors:  Jennifer C Pai; Jeffrey A Culver; Jason E Drury; Rakesh S Motani; Raquel L Lieberman; Jennifer A Maynard
Journal:  Protein Eng Des Sel       Date:  2011-01-08       Impact factor: 1.650

6.  Rapid identification of recombinant Fabs that bind to membrane proteins.

Authors:  Jungmin Kim; Robert M Stroud; Charles S Craik
Journal:  Methods       Date:  2011-09-20       Impact factor: 3.608

Review 7.  Nanobodies as Probes for Protein Dynamics in Vitro and in Cells.

Authors:  Oleg Y Dmitriev; Svetlana Lutsenko; Serge Muyldermans
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

Review 8.  Antibody fragments as tools in crystallography.

Authors:  L Griffin; A Lawson
Journal:  Clin Exp Immunol       Date:  2011-06-07       Impact factor: 4.330

9.  Structural and biophysical characterization of an epitope-specific engineered Fab fragment and complexation with membrane proteins: implications for co-crystallization.

Authors:  Jennifer L Johnson; Kevin C Entzminger; Jeongmin Hyun; Sibel Kalyoncu; David P Heaner; Ivan A Morales; Aly Sheppard; James C Gumbart; Jennifer A Maynard; Raquel L Lieberman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-27

Review 10.  Searching for interesting channels: pairing selection and molecular evolution methods to study ion channel structure and function.

Authors:  Daniel L Minor
Journal:  Mol Biosyst       Date:  2009-06-19
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.