Literature DB >> 18925405

Chromatin: linking structure and function in the nucleolus.

Peter C McKeown1, Peter J Shaw.   

Abstract

The nucleolus is an informative model structure for studying how chromatin-regulated transcription relates to nuclear organisation. In this review, we describe how chromatin controls nucleolar structure through both the modulation of rDNA activity by convergently-evolved remodelling complexes and by direct effects upon rDNA packaging. This packaging not only regulates transcription but may also be important for suppressing internal recombination between tandem rDNA repeats. The identification of nucleolar histone chaperones and novel chromatin proteins by mass spectrometry suggests that structure-specific chromatin components remain to be characterised and may regulate the nucleolus in novel ways. However, it also suggests that there is considerable overlap between nucleolar and non-nucleolar-chromatin components. We conclude that a fuller understanding of nucleolar chromatin will be essential for understanding how gene organisation is linked with nuclear architecture.

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Year:  2008        PMID: 18925405     DOI: 10.1007/s00412-008-0184-2

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  167 in total

1.  The chromatin remodeling complex NoRC targets HDAC1 to the ribosomal gene promoter and represses RNA polymerase I transcription.

Authors:  Yonggang Zhou; Raffaella Santoro; Ingrid Grummt
Journal:  EMBO J       Date:  2002-09-02       Impact factor: 11.598

2.  Mitotic occupancy and lineage-specific transcriptional control of rRNA genes by Runx2.

Authors:  Daniel W Young; Mohammad Q Hassan; Jitesh Pratap; Mario Galindo; Sayyed K Zaidi; Suk-hee Lee; Xiaoqing Yang; Ronglin Xie; Amjad Javed; Jean M Underwood; Paul Furcinitti; Anthony N Imbalzano; Sheldon Penman; Jeffrey A Nickerson; Martin A Montecino; Jane B Lian; Janet L Stein; Andre J van Wijnen; Gary S Stein
Journal:  Nature       Date:  2007-01-25       Impact factor: 49.962

Review 3.  Different epigenetic layers engage in complex crosstalk to define the epigenetic state of mammalian rRNA genes.

Authors:  Ingrid Grummt
Journal:  Hum Mol Genet       Date:  2007-04-15       Impact factor: 6.150

4.  Histones are required for transcription of yeast rRNA genes by RNA polymerase I.

Authors:  Prasad Tongaonkar; Sarah L French; Melanie L Oakes; Loan Vu; David A Schneider; Ann L Beyer; Masayasu Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-07       Impact factor: 11.205

5.  A major nucleolar protein, nucleolin, induces chromatin decondensation by binding to histone H1.

Authors:  M S Erard; P Belenguer; M Caizergues-Ferrer; A Pantaloni; F Amalric
Journal:  Eur J Biochem       Date:  1988-08-15

6.  Localization of Sir2p: the nucleolus as a compartment for silent information regulators.

Authors:  M Gotta; S Strahl-Bolsinger; H Renauld; T Laroche; B K Kennedy; M Grunstein; S M Gasser
Journal:  EMBO J       Date:  1997-06-02       Impact factor: 11.598

7.  Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation.

Authors:  Huck Hui Ng; David N Ciccone; Katrina B Morshead; Marjorie A Oettinger; Kevin Struhl
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-06       Impact factor: 11.205

8.  Histone deacetylation by Sir2 generates a transcriptionally repressed nucleoprotein complex.

Authors:  Xuejun Huang Parsons; Sandra N Garcia; Lorraine Pillus; James T Kadonaga
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-05       Impact factor: 11.205

9.  Acetylation of UBF changes during the cell cycle and regulates the interaction of UBF with RNA polymerase I.

Authors:  Joachim Meraner; Markus Lechner; Adele Loidl; Maria Goralik-Schramel; Renate Voit; Ingrid Grummt; Peter Loidl
Journal:  Nucleic Acids Res       Date:  2006-03-31       Impact factor: 16.971

10.  Phosphorylation of histone H2B at DNA double-strand breaks.

Authors:  Oscar Fernandez-Capetillo; C David Allis; André Nussenzweig
Journal:  J Exp Med       Date:  2004-06-14       Impact factor: 14.307

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  41 in total

1.  Nucleolar targeting of the chaperone hsc70 is regulated by stress, cell signaling, and a composite targeting signal which is controlled by autoinhibition.

Authors:  Piotr Bański; Hicham Mahboubi; Mohamed Kodiha; Sanhita Shrivastava; Cynthia Kanagaratham; Ursula Stochaj
Journal:  J Biol Chem       Date:  2010-05-10       Impact factor: 5.157

Review 2.  The nucleoskeleton as a genome-associated dynamic 'network of networks'.

Authors:  Dan N Simon; Katherine L Wilson
Journal:  Nat Rev Mol Cell Biol       Date:  2011-10-05       Impact factor: 94.444

3.  Alu element-containing RNAs maintain nucleolar structure and function.

Authors:  Maïwen Caudron-Herger; Teresa Pankert; Jeanette Seiler; Attila Németh; Renate Voit; Ingrid Grummt; Karsten Rippe
Journal:  EMBO J       Date:  2015-10-13       Impact factor: 11.598

Review 4.  Nucleolar DNA: the host and the guests.

Authors:  E Smirnov; D Cmarko; T Mazel; M Hornáček; I Raška
Journal:  Histochem Cell Biol       Date:  2016-02-04       Impact factor: 4.304

5.  Ribosomal DNA contributes to global chromatin regulation.

Authors:  Silvana Paredes; Keith A Maggert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-12       Impact factor: 11.205

Review 6.  Structure and epigenetics of nucleoli in comparison with non-nucleolar compartments.

Authors:  Eva Bártová; Andrea Harnicarová Horáková; Radka Uhlírová; Ivan Raska; Gabriela Galiová; Darya Orlova; Stanislav Kozubek
Journal:  J Histochem Cytochem       Date:  2009-12-21       Impact factor: 2.479

7.  Histopathological study comparing upstream binding factor expression and AgNOR staining.

Authors:  A Torres-Montaner; M Huq
Journal:  Cell Prolif       Date:  2012-08       Impact factor: 6.831

Review 8.  Regulation of nucleolus assembly by non-coding RNA polymerase II transcripts.

Authors:  Maïwen Caudron-Herger; Teresa Pankert; Karsten Rippe
Journal:  Nucleus       Date:  2016-05-03       Impact factor: 4.197

9.  Loss of nucleolar histone chaperone NPM1 triggers rearrangement of heterochromatin and synergizes with a deficiency in DNA methyltransferase DNMT3A to drive ribosomal DNA transcription.

Authors:  Karl Holmberg Olausson; Monica Nistér; Mikael S Lindström
Journal:  J Biol Chem       Date:  2014-10-27       Impact factor: 5.157

10.  Initial genomics of the human nucleolus.

Authors:  Attila Németh; Ana Conesa; Javier Santoyo-Lopez; Ignacio Medina; David Montaner; Bálint Péterfia; Irina Solovei; Thomas Cremer; Joaquin Dopazo; Gernot Längst
Journal:  PLoS Genet       Date:  2010-03-26       Impact factor: 5.917

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