Literature DB >> 18852721

In silico cancer modeling: is it ready for prime time?

Thomas S Deisboeck1, Le Zhang, Jeongah Yoon, Jose Costa.   

Abstract

At the dawn of the era of personalized, systems-driven medicine, computational or in silico modeling and the simulation of disease processes is becoming increasingly important for hypothesis generation and data integration in both experiments and clinics alike. Arguably, the use of these techniques is nowhere more visible than in oncology. To illustrate the field's vast potential, as well as its current limitations, we briefly review selected studies on modeling malignant brain tumors. Implications for clinical practice, and for clinical trial design and outcome prediction, are also discussed.

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Year:  2008        PMID: 18852721      PMCID: PMC3212937          DOI: 10.1038/ncponc1237

Source DB:  PubMed          Journal:  Nat Clin Pract Oncol        ISSN: 1743-4254


  64 in total

1.  Development of a three-dimensional multiscale agent-based tumor model: simulating gene-protein interaction profiles, cell phenotypes and multicellular patterns in brain cancer.

Authors:  Le Zhang; Chaitanya A Athale; Thomas S Deisboeck
Journal:  J Theor Biol       Date:  2006-07-27       Impact factor: 2.691

2.  A cell-based model exhibiting branching and anastomosis during tumor-induced angiogenesis.

Authors:  Amy L Bauer; Trachette L Jackson; Yi Jiang
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

3.  Conceptual and practical implications of breast tissue geometry: toward a more effective, less toxic therapy.

Authors:  Larry Norton
Journal:  Oncologist       Date:  2005 Jun-Jul

4.  The human disease network.

Authors:  Kwang-Il Goh; Michael E Cusick; David Valle; Barton Childs; Marc Vidal; Albert-László Barabási
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

5.  Computational modeling of the immune response to tumor antigens.

Authors:  Filippo Castiglione; Federico Toschi; Massimo Bernaschi; Sauro Succi; Roberta Benedetti; Brunangelo Falini; Arcangelo Liso
Journal:  J Theor Biol       Date:  2005-07-22       Impact factor: 2.691

Review 6.  The new WHO classification of brain tumours.

Authors:  P Kleihues; P C Burger; B W Scheithauer
Journal:  Brain Pathol       Date:  1993-07       Impact factor: 6.508

7.  An evolutionary model of carcinogenesis.

Authors:  Robert A Gatenby; Thomas L Vincent
Journal:  Cancer Res       Date:  2003-10-01       Impact factor: 12.701

Review 8.  Genetic pathways to primary and secondary glioblastoma.

Authors:  Hiroko Ohgaki; Paul Kleihues
Journal:  Am J Pathol       Date:  2007-05       Impact factor: 4.307

9.  Does tumor growth follow a "universal law"?

Authors:  Caterina Guiot; Piero Giorgio Degiorgis; Pier Paolo Delsanto; Pietro Gabriele; Thomas S Deisboeck
Journal:  J Theor Biol       Date:  2003-11-21       Impact factor: 2.691

10.  The clinical applications of a systems approach.

Authors:  Andrew C Ahn; Muneesh Tewari; Chi-Sang Poon; Russell S Phillips
Journal:  PLoS Med       Date:  2006-05-23       Impact factor: 11.069

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  46 in total

Review 1.  Systems pathology: a critical review.

Authors:  Jose Costa
Journal:  Mol Oncol       Date:  2011-11-27       Impact factor: 6.603

Review 2.  At the heart of computational modelling.

Authors:  S A Niederer; N P Smith
Journal:  J Physiol       Date:  2012-01-23       Impact factor: 5.182

3.  An Adaptive Multigrid Algorithm for Simulating Solid Tumor Growth Using Mixture Models.

Authors:  S M Wise; J S Lowengrub; V Cristini
Journal:  Math Comput Model       Date:  2011-01-01

4.  The game theory in thoracic surgery: from the intuitions of Luca Pacioli to the operating rooms management.

Authors:  Argante Ciocci; Andrea Viti; Alberto Terzi; Luca Bertolaccini
Journal:  J Thorac Dis       Date:  2015-11       Impact factor: 2.895

Review 5.  Multiscale imaging and computational modeling of blood flow in the tumor vasculature.

Authors:  Eugene Kim; Spyros Stamatelos; Jana Cebulla; Zaver M Bhujwalla; Aleksander S Popel; Arvind P Pathak
Journal:  Ann Biomed Eng       Date:  2012-05-08       Impact factor: 3.934

Review 6.  Current progress in patient-specific modeling.

Authors:  Maxwell Lewis Neal; Roy Kerckhoffs
Journal:  Brief Bioinform       Date:  2009-12-02       Impact factor: 11.622

Review 7.  Dissecting cancer through mathematics: from the cell to the animal model.

Authors:  Helen M Byrne
Journal:  Nat Rev Cancer       Date:  2010-03       Impact factor: 60.716

Review 8.  Physical oncology: a bench-to-bedside quantitative and predictive approach.

Authors:  Hermann B Frieboes; Mark A J Chaplain; Alastair M Thompson; Elaine L Bearer; John S Lowengrub; Vittorio Cristini
Journal:  Cancer Res       Date:  2011-01-11       Impact factor: 12.701

9.  Selection in spatial stochastic models of cancer: migration as a key modulator of fitness.

Authors:  Craig J Thalhauser; John S Lowengrub; Dwayne Stupack; Natalia L Komarova
Journal:  Biol Direct       Date:  2010-04-20       Impact factor: 4.540

10.  Introduction of hypermatrix and operator notation into a discrete mathematics simulation model of malignant tumour response to therapeutic schemes in vivo. Some operator properties.

Authors:  Georgios S Stamatakos; Dimitra D Dionysiou
Journal:  Cancer Inform       Date:  2009-10-21
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