Literature DB >> 18851981

A systems-theoretical framework for health and disease: inflammation and preconditioning from an abstract modeling point of view.

Eberhard O Voit1.   

Abstract

Modern advances in molecular biology have produced enormous amounts of data characterizing physiological and disease states in cells and organisms. While bioinformatics has facilitated the organizing and mining of these data, it is the task of systems biology to merge the available information into dynamic, explanatory and predictive models. This article takes a step into this direction. It proposes a conceptual approach toward formalizing health and disease and illustrates it in the context of inflammation and preconditioning. Instead of defining health and disease states, the emphasis is on simplexes in a high-dimensional biomarker space. These simplexes are bounded by physiological constraints and permit the quantitative characterization of personalized health trajectories, health risk profiles that change with age, and the efficacy of different treatment options. The article mainly focuses on concepts but also briefly describes how the proposed concepts might be formulated rigorously within a mathematical framework.

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Mesh:

Year:  2008        PMID: 18851981      PMCID: PMC2659667          DOI: 10.1016/j.mbs.2008.09.005

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  26 in total

1.  A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration.

Authors:  Judy Day; Jonathan Rubin; Yoram Vodovotz; Carson C Chow; Angela Reynolds; Gilles Clermont
Journal:  J Theor Biol       Date:  2006-04-17       Impact factor: 2.691

2.  A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation.

Authors:  Angela Reynolds; Jonathan Rubin; Gilles Clermont; Judy Day; Yoram Vodovotz; G Bard Ermentrout
Journal:  J Theor Biol       Date:  2006-04-03       Impact factor: 2.691

3.  Derivation of the linear-logistic model and Cox's proportional hazard model from a canonical system description.

Authors:  E O Voit; R G Knapp
Journal:  Stat Med       Date:  1997-08-15       Impact factor: 2.373

4.  Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions.

Authors:  M A Savageau
Journal:  J Theor Biol       Date:  1969-12       Impact factor: 2.691

5.  A quantitative model of the generation of N(epsilon)-(carboxymethyl)lysine in the Maillard reaction between collagen and glucose.

Authors:  António E N Ferreira; Ana M J Ponces Freire; Eberhard O Voit
Journal:  Biochem J       Date:  2003-11-15       Impact factor: 3.857

6.  "Sepsis/SIRS," physiologic classification, severity stratification, relation to cytokine elaboration and outcome prediction in posttrauma critical illness.

Authors:  D Rixen; J H Siegel; H P Friedman
Journal:  J Trauma       Date:  1996-10

7.  Cytokine patterns in patients after major vascular surgery, hemorrhagic shock, and severe blunt trauma. Relation with subsequent adult respiratory distress syndrome and multiple organ failure.

Authors:  R M Roumen; T Hendriks; J van der Ven-Jongekrijg; G A Nieuwenhuijzen; R W Sauerwein; J W van der Meer; R J Goris
Journal:  Ann Surg       Date:  1993-12       Impact factor: 12.969

Review 8.  Mechanistic simulations of inflammation: current state and future prospects.

Authors:  Yoram Vodovotz; Gregory Constantine; Jonathan Rubin; Marie Csete; Eberhard O Voit; Gary An
Journal:  Math Biosci       Date:  2008-08-26       Impact factor: 2.144

9.  Introduction of an agent-based multi-scale modular architecture for dynamic knowledge representation of acute inflammation.

Authors:  Gary An
Journal:  Theor Biol Med Model       Date:  2008-05-27       Impact factor: 2.432

Review 10.  Translational systems biology of inflammation.

Authors:  Yoram Vodovotz; Marie Csete; John Bartels; Steven Chang; Gary An
Journal:  PLoS Comput Biol       Date:  2008-04-25       Impact factor: 4.475

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  15 in total

Review 1.  From within host dynamics to the epidemiology of infectious disease: Scientific overview and challenges.

Authors:  Juan B Gutierrez; Mary R Galinski; Stephen Cantrell; Eberhard O Voit
Journal:  Math Biosci       Date:  2015-10-16       Impact factor: 2.144

2.  Determining the role of inflammation in the selection of JAK2 mutant cells in myeloproliferative neoplasms.

Authors:  Jie Zhang; Angela G Fleischman; Dominik Wodarz; Natalia L Komarova
Journal:  J Theor Biol       Date:  2017-05-10       Impact factor: 2.691

Review 3.  Dynamical systems approaches to personalized medicine.

Authors:  Jacob D Davis; Carla M Kumbale; Qiang Zhang; Eberhard O Voit
Journal:  Curr Opin Biotechnol       Date:  2019-04-09       Impact factor: 9.740

4.  Analysis of operating principles with S-system models.

Authors:  Yun Lee; Po-Wei Chen; Eberhard O Voit
Journal:  Math Biosci       Date:  2011-03-04       Impact factor: 2.144

5.  Metabolic modeling helps interpret transcriptomic changes during malaria.

Authors:  Yan Tang; Anuj Gupta; Swetha Garimalla; Mary R Galinski; Mark P Styczynski; Luis L Fonseca; Eberhard O Voit
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2017-10-22       Impact factor: 5.187

6.  Translational systems biology of inflammation: potential applications to personalized medicine.

Authors:  Qi Mi; Nicole Yee-Key Li; Cordelia Ziraldo; Ali Ghuma; Maxim Mikheev; Robert Squires; David O Okonkwo; Katherine Verdolini-Abbott; Gregory Constantine; Gary An; Yoram Vodovotz
Journal:  Per Med       Date:  2010-09-01       Impact factor: 2.512

7.  High-performance metabolic profiling with dual chromatography-Fourier-transform mass spectrometry (DC-FTMS) for study of the exposome.

Authors:  Quinlyn A Soltow; Frederick H Strobel; Keith G Mansfield; Lynn Wachtman; Youngja Park; Dean P Jones
Journal:  Metabolomics       Date:  2013-03       Impact factor: 4.290

Review 8.  Mechanistic simulations of inflammation: current state and future prospects.

Authors:  Yoram Vodovotz; Gregory Constantine; Jonathan Rubin; Marie Csete; Eberhard O Voit; Gary An
Journal:  Math Biosci       Date:  2008-08-26       Impact factor: 2.144

9.  Rotenone and paraquat perturb dopamine metabolism: A computational analysis of pesticide toxicity.

Authors:  Zhen Qi; Gary W Miller; Eberhard O Voit
Journal:  Toxicology       Date:  2013-11-20       Impact factor: 4.221

10.  Identifying quantitative operation principles in metabolic pathways: a systematic method for searching feasible enzyme activity patterns leading to cellular adaptive responses.

Authors:  Gonzalo Guillén-Gosálbez; Albert Sorribas
Journal:  BMC Bioinformatics       Date:  2009-11-24       Impact factor: 3.169

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