Literature DB >> 18835282

Mechanistic simulations of inflammation: current state and future prospects.

Yoram Vodovotz1, Gregory Constantine, Jonathan Rubin, Marie Csete, Eberhard O Voit, Gary An.   

Abstract

Inflammation is a normal, robust physiological process. It can also be viewed as a complex system that senses and attempts to resolve homeostatic perturbations initiated from within the body (for example, in autoimmune disease) or from the outside (for example, in infections). Virtually all acute and chronic diseases are either driven or modulated by inflammation. The complex interplay between beneficial and harmful arms of the inflammatory response may underlie the lack of fully effective therapies for many diseases. Mathematical modeling is emerging as a frontline tool for understanding the complexity of the inflammatory response. A series of articles in this issue highlights various modeling approaches to inflammation in the larger context of health and disease, from intracellular signaling to whole-animal physiology. Here we discuss the state of this emerging field. We note several common features of inflammation models, as well as challenges and prospects for future studies.

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Year:  2008        PMID: 18835282      PMCID: PMC2667966          DOI: 10.1016/j.mbs.2008.07.013

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  70 in total

1.  The role of initial trauma in the host's response to injury and hemorrhage: insights from a correlation of mathematical simulations and hepatic transcriptomic analysis.

Authors:  Claudio E Lagoa; John Bartels; Arie Baratt; George Tseng; Gilles Clermont; Mitchell P Fink; Timothy R Billiar; Yoram Vodovotz
Journal:  Shock       Date:  2006-12       Impact factor: 3.454

2.  In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

Authors:  Gary An
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

3.  A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration.

Authors:  Judy Day; Jonathan Rubin; Yoram Vodovotz; Carson C Chow; Angela Reynolds; Gilles Clermont
Journal:  J Theor Biol       Date:  2006-04-17       Impact factor: 2.691

4.  A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation.

Authors:  Angela Reynolds; Jonathan Rubin; Gilles Clermont; Judy Day; Yoram Vodovotz; G Bard Ermentrout
Journal:  J Theor Biol       Date:  2006-04-03       Impact factor: 2.691

5.  How relevant are in vivo and in vitro studies for clinical sepsis? A mathematical model of LPS signaling based on endotoxin tolerance.

Authors:  C Vasilescu; M Olteanu; P Flondor
Journal:  Chirurgia (Bucur)       Date:  2009 Mar-Apr

6.  Kinetics of binding of LPS to recombinant CD14, TLR4, and MD-2 proteins.

Authors:  Han Jae Shin; Hayyoung Lee; Jong Dae Park; Hak Chul Hyun; Hyung Ok Sohn; Dong Wook Lee; Young Sang Kim
Journal:  Mol Cells       Date:  2007-08-31       Impact factor: 5.034

7.  Increasing numbers of hepatic dendritic cells promote HMGB1-mediated ischemia-reperfusion injury.

Authors:  Allan Tsung; Ning Zheng; Geetha Jeyabalan; Kunihiko Izuishi; John R Klune; David A Geller; Michael T Lotze; Lina Lu; Timothy R Billiar
Journal:  J Leukoc Biol       Date:  2006-10-24       Impact factor: 4.962

8.  A mathematical simulation of the inflammatory response to anthrax infection.

Authors:  Rukmini Kumar; Carson C Chow; John D Bartels; Gilles Clermont; Yoram Vodovotz
Journal:  Shock       Date:  2008-01       Impact factor: 3.454

Review 9.  Mechanisms of disease: advanced glycation end-products and their receptor in inflammation and diabetes complications.

Authors:  Shi Fang Yan; Ravichandran Ramasamy; Ann Marie Schmidt
Journal:  Nat Clin Pract Endocrinol Metab       Date:  2008-03-11

10.  Reversing established sepsis with antagonists of endogenous high-mobility group box 1.

Authors:  Huan Yang; Mahendar Ochani; Jianhua Li; Xiaoling Qiang; Mahira Tanovic; Helena E Harris; Srinivas M Susarla; Luis Ulloa; Hong Wang; Robert DiRaimo; Christopher J Czura; Haichao Wang; Jesse Roth; H Shaw Warren; Mitchell P Fink; Matthew J Fenton; Ulf Andersson; Kevin J Tracey
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-26       Impact factor: 11.205

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  57 in total

Review 1.  Translational systems approaches to the biology of inflammation and healing.

Authors:  Yoram Vodovotz; Gregory Constantine; James Faeder; Qi Mi; Jonathan Rubin; John Bartels; Joydeep Sarkar; Robert H Squires; David O Okonkwo; Jörg Gerlach; Ruben Zamora; Shirley Luckhart; Bard Ermentrout; Gary An
Journal:  Immunopharmacol Immunotoxicol       Date:  2010-06       Impact factor: 2.730

2.  NETWORKS, BIOLOGY AND SYSTEMS ENGINEERING: A CASE STUDY IN INFLAMMATION.

Authors:  P T Foteinou; E Yang; I P Androulakis
Journal:  Comput Chem Eng       Date:  2009-12-10       Impact factor: 3.845

Review 3.  From data patterns to mechanistic models in acute critical illness.

Authors:  Jean-Marie Aerts; Wassim M Haddad; Gary An; Yoram Vodovotz
Journal:  J Crit Care       Date:  2014-03-29       Impact factor: 3.425

4.  Modeling autonomic regulation of cardiac function and heart rate variability in human endotoxemia.

Authors:  Jeremy D Scheff; Panteleimon D Mavroudis; Steven E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  Physiol Genomics       Date:  2011-06-14       Impact factor: 3.107

5.  Removal of inflammatory ascites is associated with dynamic modification of local and systemic inflammation along with prevention of acute lung injury: in vivo and in silico studies.

Authors:  Bryanna Emr; David Sadowsky; Nabil Azhar; Louis A Gatto; Gary An; Gary F Nieman; Yoram Vodovotz
Journal:  Shock       Date:  2014-04       Impact factor: 3.454

6.  Translational systems biology of inflammation and healing.

Authors:  Yoram Vodovotz
Journal:  Wound Repair Regen       Date:  2010 Jan-Feb       Impact factor: 3.617

Review 7.  A systems-theoretical framework for health and disease: inflammation and preconditioning from an abstract modeling point of view.

Authors:  Eberhard O Voit
Journal:  Math Biosci       Date:  2008-09-27       Impact factor: 2.144

8.  A semi-mechanistic integrated toxicokinetic-toxicodynamic (TK/TD) model for arsenic(III) in hepatocytes.

Authors:  Spyros K Stamatelos; Ioannis P Androulakis; Ah-Ng Tony Kong; Panos G Georgopoulos
Journal:  J Theor Biol       Date:  2012-10-12       Impact factor: 2.691

9.  Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis.

Authors:  Julia C Arciero; G Bard Ermentrout; Jeffrey S Upperman; Yoram Vodovotz; Jonathan E Rubin
Journal:  PLoS One       Date:  2010-04-19       Impact factor: 3.240

10.  Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes.

Authors:  Xu Dong; Panagiota T Foteinou; Steven E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  PLoS One       Date:  2010-02-18       Impact factor: 3.240

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