Literature DB >> 18851828

Chromatin insulators: regulatory mechanisms and epigenetic inheritance.

Ashley M Bushey1, Elizabeth R Dorman, Victor G Corces.   

Abstract

Enhancer-blocking insulators are DNA elements that disrupt the communication between a regulatory sequence, such as an enhancer or a silencer, and a promoter. Insulators participate in both transcriptional regulation and global nuclear organization, two features of chromatin that are thought to be maintained from one generation to the next through epigenetic mechanisms. Furthermore, there are many regulatory mechanisms in place that enhance or hinder insulator activity. These modes of regulation could be used to establish cell-type-specific insulator activity that is epigenetically inherited along a cell and/or organismal lineage. This review will discuss the evidence for epigenetic inheritance and regulation of insulator function.

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Year:  2008        PMID: 18851828      PMCID: PMC2576288          DOI: 10.1016/j.molcel.2008.08.017

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  65 in total

1.  Evidence for an antagonistic relationship between the boundary element-associated factor BEAF and the transcription factor DREF.

Authors:  C M Hart; O Cuvier; U K Laemmli
Journal:  Chromosoma       Date:  1999-11       Impact factor: 4.316

Review 2.  We gather together: insulators and genome organization.

Authors:  Julie A Wallace; Gary Felsenfeld
Journal:  Curr Opin Genet Dev       Date:  2007-10-24       Impact factor: 5.578

3.  Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators.

Authors:  William Stedman; Hyojeung Kang; Shu Lin; Joseph L Kissil; Marisa S Bartolomei; Paul M Lieberman
Journal:  EMBO J       Date:  2008-01-24       Impact factor: 11.598

4.  Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.

Authors:  Lars Guelen; Ludo Pagie; Emilie Brasset; Wouter Meuleman; Marius B Faza; Wendy Talhout; Bert H Eussen; Annelies de Klein; Lodewyk Wessels; Wouter de Laat; Bas van Steensel
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

5.  An element in the region responsible for premature termination of transcription mediates repression of c-myc gene expression by thyroid hormone in neuroblastoma cells.

Authors:  G Pérez-Juste; S García-Silva; A Aranda
Journal:  J Biol Chem       Date:  2000-01-14       Impact factor: 5.157

6.  A novel cis-regulatory element, the PTS, mediates an anti-insulator activity in the Drosophila embryo.

Authors:  J Zhou; M Levine
Journal:  Cell       Date:  1999-12-10       Impact factor: 41.582

7.  Chromatin fine structure of the c-MYC insulator element/DNase I-hypersensitive site I is not preserved during mitosis.

Authors:  Jun-Ichiro Komura; Hironobu Ikehata; Tetsuya Ono
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-21       Impact factor: 11.205

8.  Cohesin mediates transcriptional insulation by CCCTC-binding factor.

Authors:  Kerstin S Wendt; Keisuke Yoshida; Takehiko Itoh; Masashige Bando; Birgit Koch; Erika Schirghuber; Shuichi Tsutsumi; Genta Nagae; Ko Ishihara; Tsuyoshi Mishiro; Kazuhide Yahata; Fumio Imamoto; Hiroyuki Aburatani; Mitsuyoshi Nakao; Naoko Imamoto; Kazuhiro Maeshima; Katsuhiko Shirahige; Jan-Michael Peters
Journal:  Nature       Date:  2008-01-30       Impact factor: 49.962

9.  Functional interaction between the Fab-7 and Fab-8 boundaries and the upstream promoter region in the Drosophila Abd-B gene.

Authors:  Olga Kyrchanova; Stepan Toshchakov; Yulia Podstreshnaya; Alexander Parshikov; Pavel Georgiev
Journal:  Mol Cell Biol       Date:  2008-04-21       Impact factor: 4.272

10.  CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex.

Authors:  Eimear E Holohan; Camilla Kwong; Boris Adryan; Marek Bartkuhn; Martin Herold; Rainer Renkawitz; Steven Russell; Robert White
Journal:  PLoS Genet       Date:  2007-07       Impact factor: 5.917

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  110 in total

1.  A barrier-only boundary element delimits the formation of facultative heterochromatin in Drosophila melanogaster and vertebrates.

Authors:  Nianwei Lin; Xingguo Li; Kairong Cui; Iouri Chepelev; Feng Tie; Bo Liu; Guangyao Li; Peter Harte; Keji Zhao; Suming Huang; Lei Zhou
Journal:  Mol Cell Biol       Date:  2011-04-25       Impact factor: 4.272

2.  Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators.

Authors:  Swagatam Mukhopadhyay; Paul Schedl; Vasily M Studitsky; Anirvan M Sengupta
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

3.  CTCF-dependent chromatin insulator as a built-in attenuator of angiogenesis.

Authors:  Jianrong Lu; Ming Tang
Journal:  Transcription       Date:  2012-03-01

4.  Roles of DNA looping in enhancer-blocking activity.

Authors:  Naoko Tokuda; Masaki Sasai; George Chikenji
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

Review 5.  Child health, developmental plasticity, and epigenetic programming.

Authors:  Z Hochberg; R Feil; M Constancia; M Fraga; C Junien; J-C Carel; P Boileau; Y Le Bouc; C L Deal; K Lillycrop; R Scharfmann; A Sheppard; M Skinner; M Szyf; R A Waterland; D J Waxman; E Whitelaw; K Ong; K Albertsson-Wikland
Journal:  Endocr Rev       Date:  2010-10-22       Impact factor: 19.871

6.  A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection.

Authors:  Zhong Deng; Zhuo Wang; Nick Stong; Robert Plasschaert; Aliah Moczan; Horng-Shen Chen; Sufeng Hu; Priyankara Wikramasinghe; Ramana V Davuluri; Marisa S Bartolomei; Harold Riethman; Paul M Lieberman
Journal:  EMBO J       Date:  2012-09-25       Impact factor: 11.598

7.  Functional analysis of Drosophila polytene chromosomes decompacted unit: the interband.

Authors:  Maria Berkaeva; Sergei Demakov; Yuri B Schwartz; Igor Zhimulev
Journal:  Chromosome Res       Date:  2009-08-21       Impact factor: 5.239

8.  Brahma regulates a specific trans-splicing event at the mod(mdg4) locus of Drosophila melanogaster.

Authors:  Simei Yu; Johan Waldholm; Stefanie Böhm; Neus Visa
Journal:  RNA Biol       Date:  2014-02-06       Impact factor: 4.652

9.  Distinct chromatin configurations regulate the initiation and the maintenance of hGH gene expression.

Authors:  Yugong Ho; Brian M Shewchuk; Stephen A Liebhaber; Nancy E Cooke
Journal:  Mol Cell Biol       Date:  2013-02-19       Impact factor: 4.272

10.  Stalled Hox promoters as chromosomal boundaries.

Authors:  Vivek S Chopra; Jessica Cande; Joung-Woo Hong; Michael Levine
Journal:  Genes Dev       Date:  2009-06-10       Impact factor: 11.361

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