Literature DB >> 23428872

Distinct chromatin configurations regulate the initiation and the maintenance of hGH gene expression.

Yugong Ho1, Brian M Shewchuk, Stephen A Liebhaber, Nancy E Cooke.   

Abstract

For many mammalian genes, initiation of transcription during embryonic development must be subsequently sustained over extensive periods of adult life. It remains unclear whether maintenance of gene expression reflects the same set of pathways as are involved in initial gene activation. The human pituitary growth hormone (hGH-N) locus is activated in the differentiating somatotrope midway through embryogenesis by a multicomponent locus control region (LCR). DNase I-hypersensitive site I (HSI) of the LCR is essential to full developmental activation of the hGH-N locus. Here we demonstrate that conditional deletion of HSI from the active hGH locus in the adult pituitary effectively silences hGH-N expression. Analyses of chromatin structure and locus positioning demonstrate that a specific subset of the HSI functions active in the embryo retain their HSI dependence in the adult pituitary. These functions sustain engagement of the hGH locus with polymerase II (Pol II) factories, histone acetylation at the hGH-N promoter, and looping of the LCR to its target promoter. These data reveal that HSI is essential to both the maintenance and the initiation phases of gene expression. These observations contribute to our mechanistic understanding of how stable patterns of mammalian gene expression are established in a terminally differentiated cell.

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Year:  2013        PMID: 23428872      PMCID: PMC3624186          DOI: 10.1128/MCB.01166-12

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  43 in total

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Authors:  P Komarnitsky; E J Cho; S Buratowski
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Review 2.  Functional and mechanistic diversity of distal transcription enhancers.

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3.  Transcription factories and nuclear organization of the genome.

Authors:  C H Eskiw; N F Cope; I Clay; S Schoenfelder; T Nagano; P Fraser
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4.  Pit-1 binding sites at the somatotrope-specific DNase I hypersensitive sites I, II of the human growth hormone locus control region are essential for in vivo hGH-N gene activation.

Authors:  B M Shewchuk; S L Asa; N E Cooke; S A Liebhaber
Journal:  J Biol Chem       Date:  1999-12-10       Impact factor: 5.157

5.  Targeted recruitment of histone acetyltransferase activity to a locus control region.

Authors:  F Elefant; N E Cooke; S A Liebhaber
Journal:  J Biol Chem       Date:  2000-05-05       Impact factor: 5.157

6.  Inducible gene knockouts in the small intestinal and colonic epithelium.

Authors:  J R Saam; J I Gordon
Journal:  J Biol Chem       Date:  1999-12-31       Impact factor: 5.157

7.  Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells.

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Journal:  Nat Genet       Date:  2009-12-13       Impact factor: 38.330

8.  The human growth hormone gene cluster locus control region supports position-independent pituitary- and placenta-specific expression in the transgenic mouse.

Authors:  Y Su; S A Liebhaber; N E Cooke
Journal:  J Biol Chem       Date:  2000-03-17       Impact factor: 5.157

Review 9.  Transcription factories: genetic programming in three dimensions.

Authors:  Lucas Brandon Edelman; Peter Fraser
Journal:  Curr Opin Genet Dev       Date:  2012-02-23       Impact factor: 5.578

10.  The positioning and dynamics of origins of replication in the budding yeast nucleus.

Authors:  P Heun; T Laroche; M K Raghuraman; S M Gasser
Journal:  J Cell Biol       Date:  2001-01-22       Impact factor: 10.539

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  13 in total

1.  Evidence for a Circadian Effect on the Reduction of Human Growth Hormone Gene Expression in Response to Excess Caloric Intake.

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Journal:  J Biol Chem       Date:  2016-05-05       Impact factor: 5.157

2.  Energy homeostasis targets chromosomal reconfiguration of the human GH1 locus.

Authors:  Hana Vakili; Yan Jin; Peter A Cattini
Journal:  J Clin Invest       Date:  2014-10-08       Impact factor: 14.808

3.  An autoregulatory pathway establishes the definitive chromatin conformation at the pit-1 locus.

Authors:  Yugong Ho; Nancy E Cooke; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2015-02-17       Impact factor: 4.272

4.  Functional characterization of a human POU1F1 mutation associated with isolated growth hormone deficiency: a novel etiology for IGHD.

Authors:  Marie-Laure Sobrier; Yu-Cheng Tsai; Christelle Pérez; Bruno Leheup; Tahar Bouceba; Philippe Duquesnoy; Bruno Copin; Daria Sizova; Alfredo Penzo; Ben Z Stanger; Nancy E Cooke; Stephen A Liebhaber; Serge Amselem
Journal:  Hum Mol Genet       Date:  2015-11-26       Impact factor: 6.150

5.  The spatial structure of cell signaling systems.

Authors:  Ruth Nussinov
Journal:  Phys Biol       Date:  2013-08-02       Impact factor: 2.583

6.  Conserved pathway activation following xenogeneic, heterotypic fusion.

Authors:  Ce Yuan; Brian T Freeman; Tanner J McArdle; Jangwook P Jung; Brenda M Ogle
Journal:  FASEB J       Date:  2019-02-26       Impact factor: 5.834

7.  PRDM16 binds MED1 and controls chromatin architecture to determine a brown fat transcriptional program.

Authors:  Matthew J Harms; Hee-Woong Lim; Yugong Ho; Suzanne N Shapira; Jeff Ishibashi; Sona Rajakumari; David J Steger; Mitchell A Lazar; Kyoung-Jae Won; Patrick Seale
Journal:  Genes Dev       Date:  2015-02-01       Impact factor: 11.361

8.  Long-range looping of a locus control region drives tissue-specific chromatin packing within a multigene cluster.

Authors:  Yu-Cheng Tsai; Nancy E Cooke; Stephen A Liebhaber
Journal:  Nucleic Acids Res       Date:  2016-02-17       Impact factor: 16.971

9.  Efficient RNA Virus Targeting via CRISPR/CasRx in Fish.

Authors:  Qing Wang; Yun Liu; Chong Han; Min Yang; Fengqi Huang; Xuzhuo Duan; Shaowen Wang; Yepin Yu; Jiaxin Liu; Huirong Yang; Danqi Lu; Huihong Zhao; Yong Zhang; Qiwei Qin
Journal:  J Virol       Date:  2021-09-09       Impact factor: 5.103

Review 10.  Morphology of nuclear transcription.

Authors:  Klara Weipoltshammer; Christian Schöfer
Journal:  Histochem Cell Biol       Date:  2016-02-04       Impact factor: 4.304

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