Literature DB >> 18848900

Structural dynamics of the ribosome.

Andrei Korostelev1, Dmitri N Ermolenko, Harry F Noller.   

Abstract

Protein synthesis is inherently a dynamic process, requiring both small-scale and large-scale movements of tRNA and mRNA. It has long been suspected that these movements might be coupled to conformational changes in the ribosome, and in its RNA moieties in particular. Recently, the nature of ribosome structural dynamics has begun to emerge from a combination of approaches, most notably cryo-EM, X-ray crystallography, and FRET. Ribosome movement occurs both on a grand scale, as in the intersubunit rotational movements that are coupled to tRNA-mRNA translocation, and in intricate localized rearrangements such as those that accompany codon-anticodon recognition and peptide bond formation. In spite of much progress, our understanding of the mechanics of translation is now beset with countless new questions, reflecting the vast molecular architecture of the ribosome itself.

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Year:  2008        PMID: 18848900      PMCID: PMC3923522          DOI: 10.1016/j.cbpa.2008.08.037

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  62 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

2.  Crystal structure of an initiation factor bound to the 30S ribosomal subunit.

Authors:  A P Carter; W M Clemons; D E Brodersen; R J Morgan-Warren; T Hartsch; B T Wimberly; V Ramakrishnan
Journal:  Science       Date:  2001-01-19       Impact factor: 47.728

3.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

Review 4.  GTPases mechanisms and functions of translation factors on the ribosome.

Authors:  M V Rodnina; H Stark; A Savelsbergh; H J Wieden; D Mohr; N B Matassova; F Peske; T Daviter; C O Gualerzi; W Wintermeyer
Journal:  Biol Chem       Date:  2000 May-Jun       Impact factor: 3.915

5.  A ratchet-like inter-subunit reorganization of the ribosome during translocation.

Authors:  J Frank; R K Agrawal
Journal:  Nature       Date:  2000-07-20       Impact factor: 49.962

6.  High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.

Authors:  J Harms; F Schluenzen; R Zarivach; A Bashan; S Gat; I Agmon; H Bartels; F Franceschi; A Yonath
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

7.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

8.  Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment.

Authors:  I Vidovic; S Nottrott; K Hartmuth; R Lührmann; R Ficner
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

9.  Structure of the 30S ribosomal subunit.

Authors:  B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

10.  The kink-turn: a new RNA secondary structure motif.

Authors:  D J Klein; T M Schmeing; P B Moore; T A Steitz
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

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  74 in total

1.  Insights into the molecular determinants of EF-G catalyzed translocation.

Authors:  Leyi Wang; Roger B Altman; Scott C Blanchard
Journal:  RNA       Date:  2011-10-27       Impact factor: 4.942

2.  Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.

Authors:  Jie Zhou; Laura Lancaster; Sergei Trakhanov; Harry F Noller
Journal:  RNA       Date:  2011-12-20       Impact factor: 4.942

3.  Let's see how tmRNA rescues a stuck ribosome.

Authors:  Bruno P Klaholz
Journal:  EMBO J       Date:  2010-11-17       Impact factor: 11.598

4.  Alternate rRNA secondary structures as regulators of translation.

Authors:  Shu Feng; Heng Li; Jing Zhao; Konstantin Pervushin; Ky Lowenhaupt; Thomas U Schwartz; Peter Dröge
Journal:  Nat Struct Mol Biol       Date:  2011-01-09       Impact factor: 15.369

5.  The Ribosome Comes Alive.

Authors:  Joachim Frank
Journal:  Isr J Chem       Date:  2010-06-18       Impact factor: 3.333

6.  A rearrangement of the guanosine-binding site establishes an extended network of functional interactions in the Tetrahymena group I ribozyme active site.

Authors:  Marcello Forconi; Raghuvir N Sengupta; Joseph A Piccirilli; Daniel Herschlag
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

7.  GTPase activation of elongation factor EF-Tu by the ribosome during decoding.

Authors:  Jan-Christian Schuette; Frank V Murphy; Ann C Kelley; John R Weir; Jan Giesebrecht; Sean R Connell; Justus Loerke; Thorsten Mielke; Wei Zhang; Pawel A Penczek; V Ramakrishnan; Christian M T Spahn
Journal:  EMBO J       Date:  2009-02-19       Impact factor: 11.598

8.  Following movement of the L1 stalk between three functional states in single ribosomes.

Authors:  Peter V Cornish; Dmitri N Ermolenko; David W Staple; Lee Hoang; Robyn P Hickerson; Harry F Noller; Taekjip Ha
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-03       Impact factor: 11.205

9.  Simulating movement of tRNA through the ribosome during hybrid-state formation.

Authors:  Paul C Whitford; Karissa Y Sanbonmatsu
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

10.  Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?

Authors:  Jiří Šponer; Judit E Šponer; Anton I Petrov; Neocles B Leontis
Journal:  J Phys Chem B       Date:  2010-11-04       Impact factor: 2.991

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