Literature DB >> 18846085

The development and impact of 454 sequencing.

Jonathan M Rothberg1, John H Leamon.   

Abstract

The 454 Sequencer has dramatically increased the volume of sequencing conducted by the scientific community and expanded the range of problems that can be addressed by the direct readouts of DNA sequence. Key breakthroughs in the development of the 454 sequencing platform included higher throughput, simplified all in vitro sample preparation and the miniaturization of sequencing chemistries, enabling massively parallel sequencing reactions to be carried out at a scale and cost not previously possible. Together with other recently released next-generation technologies, the 454 platform has started to democratize sequencing, providing individual laboratories with access to capacities that rival those previously found only at a handful of large sequencing centers. Over the past 18 months, 454 sequencing has led to a better understanding of the structure of the human genome, allowed the first non-Sanger sequence of an individual human and opened up new approaches to identify small RNAs. To make next-generation technologies more widely accessible, they must become easier to use and less costly. In the longer term, the principles established by 454 sequencing might reduce cost further, potentially enabling personalized genomics.

Entities:  

Mesh:

Year:  2008        PMID: 18846085     DOI: 10.1038/nbt1485

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  138 in total

Review 1.  miRNA profiling for biomarker discovery in multiple sclerosis: from microarray to deep sequencing.

Authors:  Mireia Guerau-de-Arellano; Hansjuerg Alder; Hatice Gulcin Ozer; Amy Lovett-Racke; Michael K Racke
Journal:  J Neuroimmunol       Date:  2011-11-09       Impact factor: 3.478

Review 2.  Exploring giant plant genomes with next-generation sequencing technology.

Authors:  Laura J Kelly; Ilia J Leitch
Journal:  Chromosome Res       Date:  2011-10       Impact factor: 5.239

Review 3.  Molecular diagnostics in transplantation.

Authors:  Maarten Naesens; Minnie M Sarwal
Journal:  Nat Rev Nephrol       Date:  2010-08-24       Impact factor: 28.314

4.  Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing.

Authors:  Pei-Yuan Qian; Yong Wang; On On Lee; Stanley C K Lau; Jiangke Yang; Feras F Lafi; Abdulaziz Al-Suwailem; Tim Y H Wong
Journal:  ISME J       Date:  2010-07-29       Impact factor: 10.302

5.  Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.

Authors:  Sébastien Boisvert; François Laviolette; Jacques Corbeil
Journal:  J Comput Biol       Date:  2010-10-20       Impact factor: 1.479

Review 6.  The next-generation sequencing technology and application.

Authors:  Xiaoguang Zhou; Lufeng Ren; Qingshu Meng; Yuntao Li; Yude Yu; Jun Yu
Journal:  Protein Cell       Date:  2010-07-07       Impact factor: 14.870

7.  Size Does Matter: Application-driven Approaches for Soil Metagenomics.

Authors:  Kavita S Kakirde; Larissa C Parsley; Mark R Liles
Journal:  Soil Biol Biochem       Date:  2010-11-01       Impact factor: 7.609

Review 8.  DNA methylation correlates of PTSD: Recent findings and technical challenges.

Authors:  Filomene G Morrison; Mark W Miller; Mark W Logue; Michele Assef; Erika J Wolf
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2018-11-30       Impact factor: 5.067

9.  Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.

Authors:  Axel Künstner; Jochen B W Wolf; Niclas Backström; Osceola Whitney; Christopher N Balakrishnan; Lainy Day; Scott V Edwards; Daniel E Janes; Barney A Schlinger; Richard K Wilson; Erich D Jarvis; Wesley C Warren; Hans Ellegren
Journal:  Mol Ecol       Date:  2010-03       Impact factor: 6.185

10.  Systems biology of embryogenesis.

Authors:  Lucas B Edelman; Sriram Chandrasekaran; Nathan D Price
Journal:  Reprod Fertil Dev       Date:  2010       Impact factor: 2.311

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