Literature DB >> 18840691

Mechanism of and exquisite selectivity for O-O bond formation by the heme-dependent chlorite dismutase.

Amanda Q Lee1, Bennett R Streit, Michael J Zdilla, Mahdi M Abu-Omar, Jennifer L DuBois.   

Abstract

Chlorite dismutase (Cld) is a heme b-dependent, O-O bond forming enzyme that transforms toxic chlorite (ClO(2)(-)) into innocuous chloride and molecular oxygen. The mechanism and specificity of the reaction with chlorite and alternate oxidants were investigated. Chlorite is the sole source of dioxygen as determined by oxygen-18 labeling studies. Based on ion chromatography and mass spectrometry results, Cld is highly specific for the dismutation of chlorite to chloride and dioxygen with no other side products. Cld does not use chlorite as an oxidant for oxygen atom transfer and halogenation reactions (using cosubstrates guaiacol, thioanisole, and monochlorodimedone, respectively). When peracetic acid or H(2)O(2) was used as an alternative oxidant, oxidation and oxygen atom transfer but not halogenation reactions occurred. Monitoring the reaction of Cld with peracetic acid by rapid-mixing UV-visible spectroscopy, the formation of the high valent compound I intermediate, [(Por(*+))Fe(IV) = O], was observed [k(1) = (1.28 +/- 0.04) x 10(6) M(-1) s(-1)]. Compound I readily decayed to form compound II in a manner that is independent of peracetic acid concentration (k(2) = 170 +/- 20 s(-1)). Both compound I and a compound II-associated tryptophanyl radical that resembles cytochrome c peroxidase (Ccp) compound I were observed by EPR under freeze-quench conditions. The data collectively suggest an O-O bond-forming mechanism involving generation of a compound I intermediate via oxygen atom transfer from chlorite, and subsequent recombination of the resulting hypochlorite and compound I.

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Year:  2008        PMID: 18840691      PMCID: PMC2572943          DOI: 10.1073/pnas.0804279105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Detection of a tryptophan radical in the reaction of ascorbate peroxidase with hydrogen peroxide.

Authors:  A N Hiner; J I Martínez; M B Arnao; M Acosta; D D Turner; E Lloyd Raven; J N Rodríguez-López
Journal:  Eur J Biochem       Date:  2001-05

Review 2.  Microbial perchlorate reduction: rocket-fueled metabolism.

Authors:  John D Coates; Laurie A Achenbach
Journal:  Nat Rev Microbiol       Date:  2004-07       Impact factor: 60.633

3.  Sodium periodate, sodium chlorite, and organic hydroperoxides as hydroxylating agents in steroid hydroxylation reactions catalyzed by adrenocortical microsomal and mitochondrial cytochrome P450.

Authors:  J A Gustafsson; E G Hrycay; L Ernster
Journal:  Arch Biochem Biophys       Date:  1976-06       Impact factor: 4.013

4.  Chloroperoxidase. IX. The structure of compound I.

Authors:  L P Hager; D L Doubek; R M Silverstein; J H Hargis; J C Martin
Journal:  J Am Chem Soc       Date:  1972-06-14       Impact factor: 15.419

5.  Chloroperoxidase. 8. Formation of peroxide and halide complexes and their relation to the mechanism of the halogenation reaction.

Authors:  J A Thomas; D R Morris; L P Hager
Journal:  J Biol Chem       Date:  1970-06       Impact factor: 5.157

6.  Mechanism of the chlorination reaction catalyzed by horseradish peroxidase with chlorite.

Authors:  W D Hewson; L P Hager
Journal:  J Biol Chem       Date:  1979-05-10       Impact factor: 5.157

7.  Chloroperoxidase halogenation reactions. Chemical versus enzymic halogenating intermediates.

Authors:  R D Libby; J A Thomas; L W Kaiser; L P Hager
Journal:  J Biol Chem       Date:  1982-05-10       Impact factor: 5.157

8.  Oxoiron(IV) in chloroperoxidase compound II is basic: implications for P450 chemistry.

Authors:  Michael T Green; John H Dawson; Harry B Gray
Journal:  Science       Date:  2004-06-11       Impact factor: 47.728

9.  Metabolic primers for detection of (Per)chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences.

Authors:  Kelly S Bender; Melissa R Rice; William H Fugate; John D Coates; Laurie A Achenbach
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

10.  High-resolution crystal structures and spectroscopy of native and compound I cytochrome c peroxidase.

Authors:  Christopher A Bonagura; B Bhaskar; Hideaki Shimizu; Huiying Li; M Sundaramoorthy; Duncan E McRee; David B Goodin; Thomas L Poulos
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

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  35 in total

1.  Distinguishing Active Site Characteristics of Chlorite Dismutases with Their Cyanide Complexes.

Authors:  Zachary Geeraerts; Arianna I Celis; Jeffery A Mayfield; Megan Lorenz; Kenton R Rodgers; Jennifer L DuBois; Gudrun S Lukat-Rodgers
Journal:  Biochemistry       Date:  2018-02-16       Impact factor: 3.162

2.  Crystallization and preliminary X-ray diffraction of chlorite dismutase from Dechloromonas aromatica RCB.

Authors:  Brandon R Goblirsch; Bennett R Streit; Jennifer L DuBois; Carrie M Wilmot
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-07-30

3.  Active Sites of O2-Evolving Chlorite Dismutases Probed by Halides and Hydroxides and New Iron-Ligand Vibrational Correlations.

Authors:  Zachary Geeraerts; Kenton R Rodgers; Jennifer L DuBois; Gudrun S Lukat-Rodgers
Journal:  Biochemistry       Date:  2017-08-17       Impact factor: 3.162

4.  How active-site protonation state influences the reactivity and ligation of the heme in chlorite dismutase.

Authors:  Bennett R Streit; Béatrice Blanc; Gudrun S Lukat-Rodgers; Kenton R Rodgers; Jennifer L DuBois
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

5.  Peroxidase-type reactions suggest a heterolytic/nucleophilic O-O joining mechanism in the heme-dependent chlorite dismutase.

Authors:  Jeffrey A Mayfield; Béatrice Blanc; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  Biochemistry       Date:  2013-09-23       Impact factor: 3.162

6.  Chlorite dismutases, DyPs, and EfeB: 3 microbial heme enzyme families comprise the CDE structural superfamily.

Authors:  Brandon Goblirsch; Richard C Kurker; Bennett R Streit; Carrie M Wilmot; Jennifer L DuBois
Journal:  J Mol Biol       Date:  2011-02-25       Impact factor: 5.469

Review 7.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

Review 8.  Production of dioxygen in the dark: dismutases of oxyanions.

Authors:  Jennifer L DuBois; Sunil Ojha
Journal:  Met Ions Life Sci       Date:  2015

9.  Reactions of aquacobalamin and cob(II)alamin with chlorite and chlorine dioxide.

Authors:  Ilia A Dereven'kov; Nikita I Shpagilev; László Valkai; Denis S Salnikov; Attila K Horváth; Sergei V Makarov
Journal:  J Biol Inorg Chem       Date:  2016-11-19       Impact factor: 3.358

10.  Understanding the roles of strictly conserved tryptophan residues in O2 producing chlorite dismutases.

Authors:  Beatrice Blanc; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  Dalton Trans       Date:  2012-12-17       Impact factor: 4.390

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