Literature DB >> 27019429

LINE-1 distribution in six rodent genomes follow a species-specific pattern.

A Vieira-da-Silva1, F Adega, H Guedes-Pinto, R Chaves.   

Abstract

L1 distribution in mammal's genomes is yet a huge riddle. However, these repetitive sequences were already found in all chromosomic regions, and in general, they seem to be nonrandomly distributed in the genome. It also seems that after insertion and when they are not deleterious, they are always involved in dynamic processes occurring on that particular chromosomic region. Furthermore, it seems that large-scale genome rearrangements and L1 activity and accumulation are somehow interconnected. In the present study, we analysed L1 genomic distribution in Tatera gambiana (Muridae, Gerbillinae), Acomys sp. (Muridae, Deomyinae), Cricetomys sp. (Nesomyidae, Cricetomyinae), Microtus arvalis (Cricetidae, Arvicolinae), Phodopus roborovskii and P. sungorus (Cricetidae, Cricetinae). All the species studied here seems to exhibit a species-specific pattern.Possible mechanisms, and processes involved in L1 distribution and preferential accumulation in certain regions are di scussed.

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Year:  2016        PMID: 27019429     DOI: 10.1007/s12041-015-0595-9

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  96 in total

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2.  Genomic deletions created upon LINE-1 retrotransposition.

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Journal:  Cell       Date:  2002-08-09       Impact factor: 41.582

3.  Viability of X-autosome translocations in mammals: an epigenomic hypothesis from a rodent case-study.

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Journal:  Chromosoma       Date:  2004-07-09       Impact factor: 4.316

Review 4.  Retroelements and their impact on genome evolution and functioning.

Authors:  Elena Gogvadze; Anton Buzdin
Journal:  Cell Mol Life Sci       Date:  2009-08-02       Impact factor: 9.261

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Authors:  D H Kass; J A Peppers; M Maltbie; R J Baker
Journal:  Mamm Genome       Date:  1998-06       Impact factor: 2.957

6.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

7.  Human LINE retrotransposons generate processed pseudogenes.

Authors:  C Esnault; J Maestre; T Heidmann
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

8.  The karyotype and sex chromosomes of Praomys tullbergi (Muridae, Rodentia): a detailed characterization.

Authors:  Susana Meles; Filomena Adega; Henrique Guedes-Pinto; Raquel Chaves
Journal:  Micron       Date:  2007-07-19       Impact factor: 2.251

9.  Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes.

Authors:  Scott Steppan; Ronald Adkins; Joel Anderson
Journal:  Syst Biol       Date:  2004-08       Impact factor: 15.683

10.  Do LINEs have a role in X-chromosome inactivation?

Authors:  Mary F Lyon
Journal:  J Biomed Biotechnol       Date:  2006
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  3 in total

1.  Centromeric enrichment of LINE-1 retrotransposons and its significance for the chromosome evolution of Phyllostomid bats.

Authors:  Cibele Gomes de Sotero-Caio; Diogo Cavalcanti Cabral-de-Mello; Merilane da Silva Calixto; Guilherme Targino Valente; Cesar Martins; Vilma Loreto; Maria José de Souza; Neide Santos
Journal:  Chromosome Res       Date:  2017-09-15       Impact factor: 5.239

Review 2.  Conversion of DNA Sequences: From a Transposable Element to a Tandem Repeat or to a Gene.

Authors:  Ana Paço; Renata Freitas; Ana Vieira-da-Silva
Journal:  Genes (Basel)       Date:  2019-12-05       Impact factor: 4.096

3.  Genomic Organization of Microsatellites and LINE-1-like Retrotransposons: Evolutionary Implications for Ctenomys minutus (Rodentia: Ctenomyidae) Cytotypes.

Authors:  Thays Duarte de Oliveira; Natasha Avila Bertocchi; Rafael Kretschmer; Edivaldo H C de Oliveira; Marcelo de Bello Cioffi; Thomas Liehr; Thales R O de Freitas
Journal:  Animals (Basel)       Date:  2022-08-16       Impact factor: 3.231

  3 in total

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