Literature DB >> 18812159

Quantification of endogenous sirtuin metabolite O-acetyl-ADP-ribose.

Susan Lee1, Lei Tong, John M Denu.   

Abstract

Sirtuins are nicotinamide adenine dinucleotide (NAD(+))-dependent deacetylases that mediate cellular processes such as lifespan extension and metabolic regulation. Sirtuins form a unique metabolite, 2'-O-acetyl-ADP-ribose (OAADPr), shown to block oocyte maturation, bind to chromatin-related proteins, and activate ion channels. Given the various sirtuin phenotypes, the potential of OAADPr as a signaling molecule is extensive. However, exploration of the biological roles of OAADPr has been hindered by the lack of in vivo evidence and a reliable method for quantification. Here we provide the first direct evidence and quantification of cellular OAADPr. Compared with endogenous OAADPr levels (0.56+/-0.13 microM) in wild-type Saccharomyces cerevisiae, deletion of all five yeast sirtuins (Sir2 and Hst1-4) yielded essentially no detectable OAADPr. The single deletion of Hst2 yielded 0.37+/-0.12 microM OAADPr. Deletion of an enzyme, Ysa1, previously shown in vitro to hydrolyze OAADPr, resulted in a significant increase (0.85+/-0.24 microM) in OAADPr. Together, these data provide evidence that cellular levels of OAADPr are controlled by the action of sirtuins and can be modulated by the Nudix hydrolase Ysa1. Our methodology, consisting of internal standard (13)C-labeled OAADPr and liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) analysis, displays excellent sensitivity and a linear dynamic range from 0.2 to 500 pmol. Moreover, extraction efficiencies were greater than 75%. This methodology is an essential tool in probing the biological roles of OAADPr, especially under conditions in which sirtuin phenotypes are well established.

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Year:  2008        PMID: 18812159      PMCID: PMC2586145          DOI: 10.1016/j.ab.2008.08.033

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  42 in total

1.  An enzymatic activity in the yeast Sir2 protein that is essential for gene silencing.

Authors:  J C Tanny; G J Dowd; J Huang; H Hilz; D Moazed
Journal:  Cell       Date:  1999-12-23       Impact factor: 41.582

2.  Sirtuins deacetylate and activate mammalian acetyl-CoA synthetases.

Authors:  William C Hallows; Susan Lee; John M Denu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-21       Impact factor: 11.205

3.  Specific functions for the fission yeast Sirtuins Hst2 and Hst4 in gene regulation and retrotransposon silencing.

Authors:  Mickaël Durand-Dubief; Indranil Sinha; Fredrik Fagerström-Billai; Carolina Bonilla; Anthony Wright; Michael Grunstein; Karl Ekwall
Journal:  EMBO J       Date:  2007-04-19       Impact factor: 11.598

4.  The simultaneous measurement of nicotinamide adenine dinucleotide and related compounds by liquid chromatography/electrospray ionization tandem mass spectrometry.

Authors:  Kazuo Yamada; Nobumasa Hara; Tomoko Shibata; Harumi Osago; Mikako Tsuchiya
Journal:  Anal Biochem       Date:  2006-03-09       Impact factor: 3.365

5.  Metabolite of SIR2 reaction modulates TRPM2 ion channel.

Authors:  Olivera Grubisha; Louise A Rafty; Christina L Takanishi; Xiaojie Xu; Lei Tong; Anne-Laure Perraud; Andrew M Scharenberg; John M Denu
Journal:  J Biol Chem       Date:  2006-03-24       Impact factor: 5.157

6.  Reversible lysine acetylation controls the activity of the mitochondrial enzyme acetyl-CoA synthetase 2.

Authors:  Bjoern Schwer; Jakob Bunkenborg; Regis O Verdin; Jens S Andersen; Eric Verdin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-20       Impact factor: 11.205

7.  Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase.

Authors:  S Imai; C M Armstrong; M Kaeberlein; L Guarente
Journal:  Nature       Date:  2000-02-17       Impact factor: 49.962

8.  The 39-kDa poly(ADP-ribose) glycohydrolase ARH3 hydrolyzes O-acetyl-ADP-ribose, a product of the Sir2 family of acetyl-histone deacetylases.

Authors:  Tohru Ono; Atsushi Kasamatsu; Shunya Oka; Joel Moss
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

9.  Nicotinamide riboside promotes Sir2 silencing and extends lifespan via Nrk and Urh1/Pnp1/Meu1 pathways to NAD+.

Authors:  Peter Belenky; Frances G Racette; Katrina L Bogan; Julie M McClure; Jeffrey S Smith; Charles Brenner
Journal:  Cell       Date:  2007-05-04       Impact factor: 41.582

10.  Nutrient-sensitive mitochondrial NAD+ levels dictate cell survival.

Authors:  Hongying Yang; Tianle Yang; Joseph A Baur; Evelyn Perez; Takashi Matsui; Juan J Carmona; Dudley W Lamming; Nadja C Souza-Pinto; Vilhelm A Bohr; Anthony Rosenzweig; Rafael de Cabo; Anthony A Sauve; David A Sinclair
Journal:  Cell       Date:  2007-09-21       Impact factor: 41.582

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  15 in total

Review 1.  Function and metabolism of sirtuin metabolite O-acetyl-ADP-ribose.

Authors:  Lei Tong; John M Denu
Journal:  Biochim Biophys Acta       Date:  2010-02-20

2.  MacroH2A histone variants limit chromatin plasticity through two distinct mechanisms.

Authors:  Marek Kozlowski; David Corujo; Michael Hothorn; Iva Guberovic; Imke K Mandemaker; Charlotte Blessing; Judith Sporn; Arturo Gutierrez-Triana; Rebecca Smith; Thomas Portmann; Mathias Treier; Klaus Scheffzek; Sebastien Huet; Gyula Timinszky; Marcus Buschbeck; Andreas G Ladurner
Journal:  EMBO Rep       Date:  2018-09-03       Impact factor: 8.807

3.  Histone Deacetylases with Antagonistic Roles in Saccharomyces cerevisiae Heterochromatin Formation.

Authors:  Deborah M Thurtle-Schmidt; Anne E Dodson; Jasper Rine
Journal:  Genetics       Date:  2016-08-03       Impact factor: 4.562

4.  Identification of macrodomain proteins as novel O-acetyl-ADP-ribose deacetylases.

Authors:  Dawei Chen; Melanie Vollmar; Marianna N Rossi; Claire Phillips; Rolf Kraehenbuehl; Dea Slade; Pawan V Mehrotra; Frank von Delft; Susan K Crosthwaite; Opher Gileadi; John M Denu; Ivan Ahel
Journal:  J Biol Chem       Date:  2011-01-21       Impact factor: 5.157

5.  Orphan macrodomain protein (human C6orf130) is an O-acyl-ADP-ribose deacylase: solution structure and catalytic properties.

Authors:  Francis C Peterson; Dawei Chen; Betsy L Lytle; Marianna N Rossi; Ivan Ahel; John M Denu; Brian F Volkman
Journal:  J Biol Chem       Date:  2011-08-17       Impact factor: 5.157

Review 6.  SIRT1-dependent regulation of chromatin and transcription: linking NAD(+) metabolism and signaling to the control of cellular functions.

Authors:  Tong Zhang; W Lee Kraus
Journal:  Biochim Biophys Acta       Date:  2009-10-30

Review 7.  Biochemical effects of SIRT1 activators.

Authors:  Joseph A Baur
Journal:  Biochim Biophys Acta       Date:  2009-11-06

8.  In Bacillus subtilis, the sirtuin protein deacetylase, encoded by the srtN gene (formerly yhdZ), and functions encoded by the acuABC genes control the activity of acetyl coenzyme A synthetase.

Authors:  Jeffrey G Gardner; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2009-01-09       Impact factor: 3.490

9.  Hydrolase regulates NAD+ metabolites and modulates cellular redox.

Authors:  Lei Tong; Susan Lee; John M Denu
Journal:  J Biol Chem       Date:  2009-02-27       Impact factor: 5.157

10.  Chromatin affinity-precipitation using a small metabolic molecule: its application to analysis of O-acetyl-ADP-ribose.

Authors:  Shu-Yun Tung; Jia-Yang Hong; Thomas Walz; Danesh Moazed; Gunn-Guang Liou
Journal:  Cell Mol Life Sci       Date:  2011-07-28       Impact factor: 9.261

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