Literature DB >> 18795247

Genetic variation in strains of zebrafish (Danio rerio) and the implications for ecotoxicology studies.

T S Coe1, P B Hamilton, A M Griffiths, D J Hodgson, M A Wahab, C R Tyler.   

Abstract

There is substantial evidence that genetic variation, at both the level of the individual and population, has a significant effect on behaviour, fitness and response to toxicants. Using DNA microsatellites, we examined the genetic variation in samples of several commonly used laboratory strains of zebrafish, Danio rerio, a model species in toxicological studies. We compared the genetic variation to that found in a sample of wild fish from Bangladesh. Our findings show that the wild fish were significantly more variable than the laboratory strains for several measures of genetic variability, including allelic richness and expected heterozygosity. This lack of variation should be given due consideration for any study which attempts to extrapolate the results of ecotoxicological laboratory tests to wild populations.

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Year:  2008        PMID: 18795247     DOI: 10.1007/s10646-008-0267-0

Source DB:  PubMed          Journal:  Ecotoxicology        ISSN: 0963-9292            Impact factor:   2.823


  33 in total

Review 1.  Methods of parentage analysis in natural populations.

Authors:  Adam G Jones; William R Ardren
Journal:  Mol Ecol       Date:  2003-10       Impact factor: 6.185

Review 2.  Headwaters of the zebrafish -- emergence of a new model vertebrate.

Authors:  David Jonah Grunwald; Judith S Eisen
Journal:  Nat Rev Genet       Date:  2002-09       Impact factor: 53.242

3.  An environmentally relevant concentration of estrogen induces arrest of male gonad development in zebrafish, Danio rerio.

Authors:  Martina Fenske; Gerd Maack; Christoph Schäfers; Helmut Segner
Journal:  Environ Toxicol Chem       Date:  2005-05       Impact factor: 3.742

4.  No relationship between microsatellite variation and neonatal fitness in Antarctic fur seals, Arctocephalus gazella.

Authors:  J I Hoffman; J Forcada; W Amos
Journal:  Mol Ecol       Date:  2006-06       Impact factor: 6.185

5.  Genetic diversity and reproductive success in mandrills (Mandrillus sphinx).

Authors:  M Charpentier; J M Setchell; F Prugnolle; L A Knapp; E J Wickings; P Peignot; M Hossaert-McKey
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-07       Impact factor: 11.205

6.  Growth rate correlates to individual heterozygosity in the European eel, Anguilla anguilla L.

Authors:  J M Pujolar; G E Maes; C Vancoillie; F A M Volckaert
Journal:  Evolution       Date:  2005-01       Impact factor: 3.694

Review 7.  Zebrafish as a model vertebrate for investigating chemical toxicity.

Authors:  Adrian J Hill; Hiroki Teraoka; Warren Heideman; Richard E Peterson
Journal:  Toxicol Sci       Date:  2005-02-09       Impact factor: 4.849

8.  An environmental estrogen alters reproductive hierarchies, disrupting sexual selection in group-spawning fish.

Authors:  Tobias S Coe; Patrick B Hamilton; David Hodgson; Gregory C Paull; Jamie R Stevens; Katie Sumner; Charles R Tyler
Journal:  Environ Sci Technol       Date:  2008-07-01       Impact factor: 9.028

Review 9.  Small fish models for identifying and assessing the effects of endocrine-disrupting chemicals.

Authors:  Gerald T Ankley; Rodney D Johnson
Journal:  ILAR J       Date:  2004

10.  Laboratory culturing and selection for increased resistance to cadmium reduce genetic variation in the least killifish, Heterandria formosa.

Authors:  N R Giridhar Athrey; Paul L Leberg; Paul L Klerks
Journal:  Environ Toxicol Chem       Date:  2007-09       Impact factor: 3.742

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  24 in total

1.  Efficient mapping and cloning of mutations in zebrafish by low-coverage whole-genome sequencing.

Authors:  Margot E Bowen; Katrin Henke; Kellee R Siegfried; Matthew L Warman; Matthew P Harris
Journal:  Genetics       Date:  2011-12-14       Impact factor: 4.562

Review 2.  A fish is not a mouse: understanding differences in background genetics is critical for reproducibility.

Authors:  Marcus J Crim; Christian Lawrence
Journal:  Lab Anim (NY)       Date:  2020-12-02       Impact factor: 12.625

3.  Measuring behavioral and endocrine responses to novelty stress in adult zebrafish.

Authors:  Jonathan Cachat; Adam Stewart; Leah Grossman; Siddharth Gaikwad; Ferdous Kadri; Kyung Min Chung; Nadine Wu; Keith Wong; Sudipta Roy; Christopher Suciu; Jason Goodspeed; Marco Elegante; Brett Bartels; Salem Elkhayat; David Tien; Julia Tan; Ashley Denmark; Thomas Gilder; Evan Kyzar; John Dileo; Kevin Frank; Katie Chang; Eli Utterback; Peter Hart; Allan V Kalueff
Journal:  Nat Protoc       Date:  2010-10-14       Impact factor: 13.491

Review 4.  Genetic variation, inbreeding and chemical exposure--combined effects in wildlife and critical considerations for ecotoxicology.

Authors:  A Ross Brown; David J Hosken; François Balloux; Lisa K Bickley; Gareth LePage; Stewart F Owen; Malcolm J Hetheridge; Charles R Tyler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-11-27       Impact factor: 6.237

5.  SNPfisher: tools for probing genetic variation in laboratory-reared zebrafish.

Authors:  Matthew G Butler; James R Iben; Kurt C Marsden; Jonathan A Epstein; Michael Granato; Brant M Weinstein
Journal:  Development       Date:  2015-03-26       Impact factor: 6.868

6.  Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis.

Authors:  Kim H Brown; Kimberly P Dobrinski; Arthur S Lee; Omer Gokcumen; Ryan E Mills; Xinghua Shi; Wilson W S Chong; Jin Yun Helen Chen; Paulo Yoo; Sthuthi David; Samuel M Peterson; Towfique Raj; Kwong Wai Choy; Barbara E Stranger; Robin E Williamson; Leonard I Zon; Jennifer L Freeman; Charles Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

7.  An Interrogation of Shared and Unique Copy Number Variants Across Genetically Distinct Zebrafish Strains.

Authors:  Lindsay A Holden; Charles Wilson; Zachary Heineman; Kimberly P Dobrinski; Kim H Brown
Journal:  Zebrafish       Date:  2018-11-10       Impact factor: 1.985

8.  Genetic Screen for Postembryonic Development in the Zebrafish (Danio rerio): Dominant Mutations Affecting Adult Form.

Authors:  Katrin Henke; Jacob M Daane; M Brent Hawkins; Christopher M Dooley; Elisabeth M Busch-Nentwich; Derek L Stemple; Matthew P Harris
Journal:  Genetics       Date:  2017-08-23       Impact factor: 4.562

9.  Effects of Bisphenol A on redox balance in red blood and sperm cells and spermatic quality in zebrafish Danio rerio.

Authors:  C R Silveira; A S Varela Junior; C D Corcini; S L Soares; A N Anciuti; M T Kütter; P E Martínez
Journal:  Ecotoxicology       Date:  2019-08-08       Impact factor: 2.823

10.  A sequence-based variation map of zebrafish.

Authors:  Ashok Patowary; Ramya Purkanti; Meghna Singh; Rajendra Chauhan; Angom Ramcharan Singh; Mohit Swarnkar; Naresh Singh; Vikas Pandey; Carlos Torroja; Matthew D Clark; Jean-Pierre Kocher; Karl J Clark; Derek L Stemple; Eric W Klee; Stephen C Ekker; Vinod Scaria; Sridhar Sivasubbu
Journal:  Zebrafish       Date:  2013-03       Impact factor: 1.985

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