Literature DB >> 28835471

Genetic Screen for Postembryonic Development in the Zebrafish (Danio rerio): Dominant Mutations Affecting Adult Form.

Katrin Henke1,2, Jacob M Daane3,2, M Brent Hawkins3,2,4, Christopher M Dooley5, Elisabeth M Busch-Nentwich5,6, Derek L Stemple5, Matthew P Harris1,2.   

Abstract

Large-scale forward genetic screens have been instrumental for identifying genes that regulate development, homeostasis, and regeneration, as well as the mechanisms of disease. The zebrafish, Danio rerio, is an established genetic and developmental model used in genetic screens to uncover genes necessary for early development. However, the regulation of postembryonic development has received less attention as these screens are more labor intensive and require extensive resources. The lack of systematic interrogation of late development leaves large aspects of the genetic regulation of adult form and physiology unresolved. To understand the genetic control of postembryonic development, we performed a dominant screen for phenotypes affecting the adult zebrafish. In our screen, we identified 72 adult viable mutants showing changes in the shape of the skeleton as well as defects in pigmentation. For efficient mapping of these mutants and mutation identification, we devised a new mapping strategy based on identification of mutant-specific haplotypes. Using this method in combination with a candidate gene approach, we were able to identify linked mutations for 22 out of 25 mutants analyzed. Broadly, our mutational analysis suggests that there are key genes and pathways associated with late development. Many of these pathways are shared with humans and are affected in various disease conditions, suggesting constraint in the genetic pathways that can lead to change in adult form. Taken together, these results show that dominant screens are a feasible and productive means to identify mutations that can further our understanding of gene function during postembryonic development and in disease.
Copyright © 2017 by the Genetics Society of America.

Entities:  

Keywords:  dominant screen; mapping; pigment; postembryonic; skeletogenesis; zebrafish

Mesh:

Substances:

Year:  2017        PMID: 28835471      PMCID: PMC5629327          DOI: 10.1534/genetics.117.300187

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  41 in total

1.  A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data.

Authors:  Heng Li
Journal:  Bioinformatics       Date:  2011-09-08       Impact factor: 6.937

2.  Myosin heavy chain expression in cranial, pectoral fin, and tail muscle regions of zebrafish embryos.

Authors:  Mou-Yun Peng; Hui-Ju Wen; Li-Jane Shih; Ching-Ming Kuo; Sheng-Ping L Hwang
Journal:  Mol Reprod Dev       Date:  2002-12       Impact factor: 2.609

3.  Hsp47 mediates Cx43-dependent skeletal growth and patterning in the regenerating fin.

Authors:  Joyita Bhadra; M Kathryn Iovine
Journal:  Mech Dev       Date:  2015-06-20       Impact factor: 1.882

4.  Attenuated BMP1 function compromises osteogenesis, leading to bone fragility in humans and zebrafish.

Authors:  P V Asharani; Katharina Keupp; Oliver Semler; Wenshen Wang; Yun Li; Holger Thiele; Gökhan Yigit; Esther Pohl; Jutta Becker; Peter Frommolt; Carmen Sonntag; Janine Altmüller; Katharina Zimmermann; Daniel S Greenspan; Nurten A Akarsu; Christian Netzer; Eckhard Schönau; Radu Wirth; Matthias Hammerschmidt; Peter Nürnberg; Bernd Wollnik; Thomas J Carney
Journal:  Am J Hum Genet       Date:  2012-04-06       Impact factor: 11.025

5.  Duplication of fgfr1 permits Fgf signaling to serve as a target for selection during domestication.

Authors:  Nicolas Rohner; Miklós Bercsényi; László Orbán; Maria E Kolanczyk; Dirk Linke; Michael Brand; Christiane Nüsslein-Volhard; Matthew P Harris
Journal:  Curr Biol       Date:  2009-09-03       Impact factor: 10.834

6.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

7.  Mutation mapping and identification by whole-genome sequencing.

Authors:  Ignaty Leshchiner; Kristen Alexa; Peter Kelsey; Ivan Adzhubei; Christina A Austin-Tse; Jeffrey D Cooney; Heidi Anderson; Matthew J King; Rolf W Stottmann; Maija K Garnaas; Seungshin Ha; Iain A Drummond; Barry H Paw; Trista E North; David R Beier; Wolfram Goessling; Shamil R Sunyaev
Journal:  Genome Res       Date:  2012-05-03       Impact factor: 9.043

8.  Visualizing genomic information across chromosomes with PhenoGram.

Authors:  Daniel Wolfe; Scott Dudek; Marylyn D Ritchie; Sarah A Pendergrass
Journal:  BioData Min       Date:  2013-10-16       Impact factor: 2.522

9.  The Ensembl Variant Effect Predictor.

Authors:  William McLaren; Laurent Gil; Sarah E Hunt; Harpreet Singh Riat; Graham R S Ritchie; Anja Thormann; Paul Flicek; Fiona Cunningham
Journal:  Genome Biol       Date:  2016-06-06       Impact factor: 13.583

10.  Mapping Challenging Mutations by Whole-Genome Sequencing.

Authors:  Harold E Smith; Amy S Fabritius; Aimee Jaramillo-Lambert; Andy Golden
Journal:  G3 (Bethesda)       Date:  2016-05-03       Impact factor: 3.154

View more
  25 in total

1.  Notochordal Signals Establish Phylogenetic Identity of the Teleost Spine.

Authors:  Brianna Peskin; Katrin Henke; Nicolás Cumplido; Stephen Treaster; Matthew P Harris; Michel Bagnat; Gloria Arratia
Journal:  Curr Biol       Date:  2020-06-18       Impact factor: 10.834

Review 2.  Fishing forward and reverse: Advances in zebrafish phenomics.

Authors:  Ricardo Fuentes; Joaquín Letelier; Benjamin Tajer; Leonardo E Valdivia; Mary C Mullins
Journal:  Mech Dev       Date:  2018-08-18       Impact factor: 1.882

Review 3.  FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research.

Authors:  Bridget D Samuels; Robert Aho; James F Brinkley; Alejandro Bugacov; Eleanor Feingold; Shannon Fisher; Ana S Gonzalez-Reiche; Joseph G Hacia; Benedikt Hallgrimsson; Karissa Hansen; Matthew P Harris; Thach-Vu Ho; Greg Holmes; Joan E Hooper; Ethylin Wang Jabs; Kenneth L Jones; Carl Kesselman; Ophir D Klein; Elizabeth J Leslie; Hong Li; Eric C Liao; Hannah Long; Na Lu; Richard L Maas; Mary L Marazita; Jaaved Mohammed; Sara Prescott; Robert Schuler; Licia Selleri; Richard A Spritz; Tomek Swigut; Harm van Bakel; Axel Visel; Ian Welsh; Cristina Williams; Trevor J Williams; Joanna Wysocka; Yuan Yuan; Yang Chai
Journal:  Development       Date:  2020-09-21       Impact factor: 6.868

4.  Conserved but flexible modularity in the zebrafish skull: implications for craniofacial evolvability.

Authors:  Kevin J Parsons; Young H Son; Amelie Crespel; Davide Thambithurai; Shaun Killen; Matthew P Harris; R Craig Albertson
Journal:  Proc Biol Sci       Date:  2018-04-25       Impact factor: 5.349

5.  ahr2, But Not ahr1a or ahr1b, Is Required for Craniofacial and Fin Development and TCDD-dependent Cardiotoxicity in Zebrafish.

Authors:  Jaclyn P Souder; Daniel A Gorelick
Journal:  Toxicol Sci       Date:  2019-07-01       Impact factor: 4.849

Review 6.  A Baseline for Skeletal Investigations in Medaka (Oryzias latipes): The Effects of Rearing Density on the Postcranial Phenotype.

Authors:  Claudia Di Biagio; Zachary Dellacqua; Arianna Martini; Ann Huysseune; Michele Scardi; Paul Eckhard Witten; Clara Boglione
Journal:  Front Endocrinol (Lausanne)       Date:  2022-06-30       Impact factor: 6.055

Review 7.  Zebrafish: An Emerging Model for Orthopedic Research.

Authors:  Björn Busse; Jenna L Galloway; Ryan S Gray; Matthew P Harris; Ronald Y Kwon
Journal:  J Orthop Res       Date:  2019-12-12       Impact factor: 3.102

8.  Unique and non-redundant function of csf1r paralogues in regulation and evolution of post-embryonic development of the zebrafish.

Authors:  Joana Caetano-Lopes; Katrin Henke; Katia Urso; Jeffrey Duryea; Julia F Charles; Matthew L Warman; Matthew P Harris
Journal:  Development       Date:  2020-01-22       Impact factor: 6.862

9.  Zebrafish type I collagen mutants faithfully recapitulate human type I collagenopathies.

Authors:  Charlotte Gistelinck; Ronald Y Kwon; Fransiska Malfait; Sofie Symoens; Matthew P Harris; Katrin Henke; Michael B Hawkins; Shannon Fisher; Patrick Sips; Brecht Guillemyn; Jan Willem Bek; Petra Vermassen; Hanna De Saffel; Paul Eckhard Witten; MaryAnn Weis; Anne De Paepe; David R Eyre; Andy Willaert; Paul J Coucke
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-06       Impact factor: 11.205

10.  Saturation mutagenesis defines novel mouse models of severe spine deformity.

Authors:  Jonathan J Rios; Kristin Denton; Hao Yu; Kandamurugu Manickam; Shannon Garner; Jamie Russell; Sara Ludwig; Jill A Rosenfeld; Pengfei Liu; Jake Munch; Daniel J Sucato; Bruce Beutler; Carol A Wise
Journal:  Dis Model Mech       Date:  2021-06-18       Impact factor: 5.758

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.