Literature DB >> 18794842

The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure.

Xu Lu1, Matthew D Simon, Jayanth V Chodaparambil, Jeffrey C Hansen, Kevan M Shokat, Karolin Luger.   

Abstract

Histone methylation regulates chromatin function dependent on the site and degree of the modification. In addition to creating binding sites for proteins, methylated lysine residues are likely to influence chromatin structure directly. Here we present crystal structures of nucleosomes reconstituted with methylated histones and investigate the folding behavior of resulting arrays. We demonstrate that dimethylation of histone H3 at lysine residue 79 locally alters the nucleosomal surface, whereas trimethylation of H4 at lysine residue 20 affects higher-order structure.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18794842      PMCID: PMC2648974          DOI: 10.1038/nsmb.1489

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  21 in total

Review 1.  Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions.

Authors:  Jeffrey C Hansen
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001-10-25

2.  Reconstitution of nucleosome core particles from recombinant histones and DNA.

Authors:  Pamela N Dyer; Raji S Edayathumangalam; Cindy L White; Yunhe Bao; Srinivas Chakravarthy; Uma M Muthurajan; Karolin Luger
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

3.  High-resolution profiling of histone methylations in the human genome.

Authors:  Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Dustin E Schones; Zhibin Wang; Gang Wei; Iouri Chepelev; Keji Zhao
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

4.  The nucleosome surface regulates chromatin compaction and couples it with transcriptional repression.

Authors:  Jiansheng Zhou; Jun Y Fan; Danny Rangasamy; David J Tremethick
Journal:  Nat Struct Mol Biol       Date:  2007-10-28       Impact factor: 15.369

Review 5.  Interplay between chromatin remodelers and protein arginine methyltransferases.

Authors:  Sharmistha Pal; Saïd Sif
Journal:  J Cell Physiol       Date:  2007-11       Impact factor: 6.384

6.  A highly basic histone H4 domain bound to the sharply bent region of nucleosomal DNA.

Authors:  K K Ebralidse; S A Grachev; A D Mirzabekov
Journal:  Nature       Date:  1988-01-28       Impact factor: 49.962

7.  The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase gcn5p.

Authors:  D J Owen; P Ornaghi; J C Yang; N Lowe; P R Evans; P Ballario; D Neuhaus; P Filetici; A A Travers
Journal:  EMBO J       Date:  2000-11-15       Impact factor: 11.598

8.  MeCP2-chromatin interactions include the formation of chromatosome-like structures and are altered in mutations causing Rett syndrome.

Authors:  Tatiana Nikitina; Rajarshi P Ghosh; Rachel A Horowitz-Scherer; Jeffrey C Hansen; Sergei A Grigoryev; Christopher L Woodcock
Journal:  J Biol Chem       Date:  2007-07-27       Impact factor: 5.157

9.  Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Authors:  Tarjei S Mikkelsen; Manching Ku; David B Jaffe; Biju Issac; Erez Lieberman; Georgia Giannoukos; Pablo Alvarez; William Brockman; Tae-Kyung Kim; Richard P Koche; William Lee; Eric Mendenhall; Aisling O'Donovan; Aviva Presser; Carsten Russ; Xiaohui Xie; Alexander Meissner; Marius Wernig; Rudolf Jaenisch; Chad Nusbaum; Eric S Lander; Bradley E Bernstein
Journal:  Nature       Date:  2007-07-01       Impact factor: 49.962

10.  Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle.

Authors:  Yasuo Tsunaka; Naoko Kajimura; Shin-ichi Tate; Kosuke Morikawa
Journal:  Nucleic Acids Res       Date:  2005-06-10       Impact factor: 16.971

View more
  100 in total

Review 1.  Toward convergence of experimental studies and theoretical modeling of the chromatin fiber.

Authors:  Tamar Schlick; Jeff Hayes; Sergei Grigoryev
Journal:  J Biol Chem       Date:  2011-12-07       Impact factor: 5.157

Review 2.  Chemical and biochemical approaches in the study of histone methylation and demethylation.

Authors:  Keqin Kathy Li; Cheng Luo; Dongxia Wang; Hualiang Jiang; Y George Zheng
Journal:  Med Res Rev       Date:  2012-07       Impact factor: 12.944

Review 3.  Nucleosome structural studies.

Authors:  Song Tan; Curt A Davey
Journal:  Curr Opin Struct Biol       Date:  2010-12-19       Impact factor: 6.809

Review 4.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

5.  Identification of a functional hotspot on ubiquitin required for stimulation of methyltransferase activity on chromatin.

Authors:  Matthew T Holt; Yael David; Sam Pollock; Zhanyun Tang; Jongcheol Jeon; Jaehoon Kim; Robert G Roeder; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

6.  Identification of the Post-translational Modifications Present in Centromeric Chromatin.

Authors:  Aaron O Bailey; Tanya Panchenko; Jeffrey Shabanowitz; Stephanie M Lehman; Dina L Bai; Donald F Hunt; Ben E Black; Daniel R Foltz
Journal:  Mol Cell Proteomics       Date:  2015-12-18       Impact factor: 5.911

Review 7.  The upstreams and downstreams of H3K79 methylation by DOT1L.

Authors:  Hanneke Vlaming; Fred van Leeuwen
Journal:  Chromosoma       Date:  2016-01-04       Impact factor: 4.316

8.  Determinants of histone H4 N-terminal domain function during nucleosomal array oligomerization: roles of amino acid sequence, domain length, and charge density.

Authors:  Steven J McBryant; Joshua Klonoski; Troy C Sorensen; Sarah S Norskog; Sere Williams; Michael G Resch; James A Toombs; Sarah E Hobdey; Jeffrey C Hansen
Journal:  J Biol Chem       Date:  2009-04-24       Impact factor: 5.157

9.  Assembly of nucleosomal arrays from recombinant core histones and nucleosome positioning DNA.

Authors:  Ryan A Rogge; Anna A Kalashnikova; Uma M Muthurajan; Mary E Porter-Goff; Karolin Luger; Jeffrey C Hansen
Journal:  J Vis Exp       Date:  2013-09-10       Impact factor: 1.355

10.  Dynamic Control of X Chromosome Conformation and Repression by a Histone H4K20 Demethylase.

Authors:  Katjuša Brejc; Qian Bian; Satoru Uzawa; Bayly S Wheeler; Erika C Anderson; David S King; Philip J Kranzusch; Christine G Preston; Barbara J Meyer
Journal:  Cell       Date:  2017-08-31       Impact factor: 41.582

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.