Literature DB >> 18779814

What are decision trees?

Carl Kingsford1, Steven L Salzberg.   

Abstract

Decision trees have been applied to problems such as assigning protein function and predicting splice sites. How do these classifiers work, what types of problems can they solve and what are their advantages over alternatives?

Entities:  

Mesh：

Year:  2008        PMID： 18779814      PMCID： PMC2701298          DOI： 10.1038/nbt0908-1011

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


  4 in total

1.  Combining biological networks to predict genetic interactions.

Authors:  Sharyl L Wong; Lan V Zhang; Amy H Y Tong; Zhijian Li; Debra S Goldberg; Oliver D King; Guillaume Lesage; Marc Vidal; Brenda Andrews; Howard Bussey; Charles Boone; Frederick P Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-20       Impact factor: 11.205

2.  Prediction of protein-protein interactions using random decision forest framework.

Authors:  Xue-Wen Chen; Mei Liu
Journal:  Bioinformatics       Date:  2005-10-18       Impact factor: 6.937

3.  Predicting genetic regulatory response using classification.

Authors:  Manuel Middendorf; Anshul Kundaje; Chris Wiggins; Yoav Freund; Christina Leslie
Journal:  Bioinformatics       Date:  2004-08-04       Impact factor: 6.937

4.  JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions.

Authors:  Jonathan E Allen; William H Majoros; Mihaela Pertea; Steven L Salzberg
Journal:  Genome Biol       Date:  2006-08-07       Impact factor: 13.583
  4 in total
  77 in total

Review 1.  Application of machine learning algorithms for clinical predictive modeling: a data-mining approach in SCT.

Authors:  R Shouval; O Bondi; H Mishan; A Shimoni; R Unger; A Nagler
Journal:  Bone Marrow Transplant       Date:  2013-10-07       Impact factor: 5.483

2.  Molecular properties and CYP2D6 substrates: central nervous system therapeutics case study and pattern analysis of a substrate database.

Authors:  Laura K Chico; Heather A Behanna; Wenhui Hu; Guifa Zhong; Saktimayee Mitra Roy; D Martin Watterson
Journal:  Drug Metab Dispos       Date:  2009-08-06       Impact factor: 3.922

3.  Prediction of antimicrobial activity of synthetic peptides by a decision tree model.

Authors:  Felipe Lira; Pedro S Perez; José A Baranauskas; Sérgio R Nozawa
Journal:  Appl Environ Microbiol       Date:  2013-03-01       Impact factor: 4.792

4.  Highly accurate two-gene signature for gastric cancer.

Authors:  Zhi Yan; Weitian Xu; Yimin Xiong; Yi Cheng; Hualin Xu; Zhigang Wang; Guorong Zheng
Journal:  Med Oncol       Date:  2013-04-19       Impact factor: 3.064

5.  Probing light chain mutation effects on thrombin via molecular dynamics simulations and machine learning.

Authors:  Jiajie Xiao; Ryan L Melvin; Freddie R Salsbury
Journal:  J Biomol Struct Dyn       Date:  2018-03-02

6.  The SubCons webserver: A user friendly web interface for state-of-the-art subcellular localization prediction.

Authors:  M Salvatore; N Shu; A Elofsson
Journal:  Protein Sci       Date:  2017-10-24       Impact factor: 6.725

7.  Gamma-Glutamyl Transferase (GGT) Is the Leading External Quality Assurance Predictor of ISO15189 Compliance for Pathology Laboratories.

Authors:  Brett A Lidbury; Gus Koerbin; Alice M Richardson; Tony Badrick
Journal:  Diagnostics (Basel)       Date:  2021-04-13

8.  Designing focused chemical libraries enriched in protein-protein interaction inhibitors using machine-learning methods.

Authors:  Christelle Reynès; Hélène Host; Anne-Claude Camproux; Guillaume Laconde; Florence Leroux; Anne Mazars; Benoit Deprez; Robin Fahraeus; Bruno O Villoutreix; Olivier Sperandio
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

9.  Fitting the complexity of GPCRs modulation into simple hypotheses of ligand design.

Authors:  Chiara Custodi; Roberto Nuti; Tudor I Oprea; Antonio Macchiarulo
Journal:  J Mol Graph Model       Date:  2012-07-20       Impact factor: 2.518

10.  Challenges in Biomarker Discovery: Combining Expert Insights with Statistical Analysis of Complex Omics Data.

Authors:  Jason E McDermott; Jing Wang; Hugh Mitchell; Bobbie-Jo Webb-Robertson; Ryan Hafen; John Ramey; Karin D Rodland
Journal:  Expert Opin Med Diagn       Date:  2013-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.