Literature DB >> 18778966

Switching the light on plant riboswitches.

Samuel E Bocobza1, Asaph Aharoni.   

Abstract

Riboswitches are natural RNA sensors that affect post-transcriptional processes via their capacity to bind small molecules. To date, these mRNA structures have been shown to regulate the biosynthesis of essential metabolites, including vitamins and amino acids. Although bacterial riboswitches are widespread and characterized, only a single eukaryotic, thiamin-pyrophosphate-binding riboswitch has recently been discovered to direct gene expression by regulating mRNA splicing in fungi, green algae and land plants. It is unclear how widespread riboswitches are and what additional roles they have in eukaryotes. When engineered in plants, riboswitches can function autonomously to modulate gene expression. These discoveries not only trigger novel findings regarding RNA switches in plants, but also spur the exploitation of riboswitches for monitoring metabolite concentrations in planta.

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Year:  2008        PMID: 18778966     DOI: 10.1016/j.tplants.2008.07.004

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  28 in total

1.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

Authors:  Irma Lozada-Chávez; Peter F Stadler; Sonja J Prohaska
Journal:  Orig Life Evol Biosph       Date:  2012-02-10       Impact factor: 1.950

2.  An upstream open reading frame is essential for feedback regulation of ascorbate biosynthesis in Arabidopsis.

Authors:  William A Laing; Marcela Martínez-Sánchez; Michele A Wright; Sean M Bulley; Di Brewster; Andrew P Dare; Maysoon Rassam; Daisy Wang; Roy Storey; Richard C Macknight; Roger P Hellens
Journal:  Plant Cell       Date:  2015-02-27       Impact factor: 11.277

Review 3.  Metabolite sensing in eukaryotic mRNA biology.

Authors:  Carina C Clingman; Sean P Ryder
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-05-07       Impact factor: 9.957

4.  Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod.

Authors:  Laise Rosado-Souza; Sebastian Proost; Michael Moulin; Susan Bergmann; Samuel E Bocobza; Asaph Aharoni; Teresa B Fitzpatrick; Marek Mutwil; Alisdair R Fernie; Toshihiro Obata
Journal:  Plant Physiol       Date:  2019-03-05       Impact factor: 8.340

5.  A new approach for detecting riboswitches in DNA sequences.

Authors:  Jessen T Havill; Chinmoy Bhatiya; Steven M Johnson; Joseph D Sheets; Jeffrey S Thompson
Journal:  Bioinformatics       Date:  2014-07-11       Impact factor: 6.937

6.  Regulation of gene expression in diverse cyanobacterial species by using theophylline-responsive riboswitches.

Authors:  Amy T Ma; Calvin M Schmidt; James W Golden
Journal:  Appl Environ Microbiol       Date:  2014-08-22       Impact factor: 4.792

7.  Folding energy landscape of the thiamine pyrophosphate riboswitch aptamer.

Authors:  Peter C Anthony; Christian F Perez; Cuauhtémoc García-García; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-04       Impact factor: 11.205

8.  Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution.

Authors:  Jörg Rinnenthal; Birgit Klinkert; Franz Narberhaus; Harald Schwalbe
Journal:  Nucleic Acids Res       Date:  2010-03-07       Impact factor: 16.971

9.  A pH-responsive riboregulator.

Authors:  Gal Nechooshtan; Maya Elgrably-Weiss; Abigail Sheaffer; Eric Westhof; Shoshy Altuvia
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

Review 10.  Amino acid recognition and gene regulation by riboswitches.

Authors:  Alexander Serganov; Dinshaw J Patel
Journal:  Biochim Biophys Acta       Date:  2009-07-18
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