Literature DB >> 25724639

An upstream open reading frame is essential for feedback regulation of ascorbate biosynthesis in Arabidopsis.

William A Laing1, Marcela Martínez-Sánchez2, Michele A Wright2, Sean M Bulley2, Di Brewster2, Andrew P Dare2, Maysoon Rassam2, Daisy Wang2, Roy Storey2, Richard C Macknight3, Roger P Hellens3.   

Abstract

Ascorbate (vitamin C) is an essential antioxidant and enzyme cofactor in both plants and animals. Ascorbate concentration is tightly regulated in plants, partly to respond to stress. Here, we demonstrate that ascorbate concentrations are determined via the posttranscriptional repression of GDP-l-galactose phosphorylase (GGP), a major control enzyme in the ascorbate biosynthesis pathway. This regulation requires a cis-acting upstream open reading frame (uORF) that represses the translation of the downstream GGP open reading frame under high ascorbate concentration. Disruption of this uORF stops the ascorbate feedback regulation of translation and results in increased ascorbate concentrations in leaves. The uORF is predicted to initiate at a noncanonical codon (ACG rather than AUG) and encode a 60- to 65-residue peptide. Analysis of ribosome protection data from Arabidopsis thaliana showed colocation of high levels of ribosomes with both the uORF and the main coding sequence of GGP. Together, our data indicate that the noncanonical uORF is translated and encodes a peptide that functions in the ascorbate inhibition of translation. This posttranslational regulation of ascorbate is likely an ancient mechanism of control as the uORF is conserved in GGP genes from mosses to angiosperms.
© 2015 American Society of Plant Biologists. All rights reserved.

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Year:  2015        PMID: 25724639      PMCID: PMC4558653          DOI: 10.1105/tpc.114.133777

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  55 in total

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Authors:  M Amparo Asensi-Fabado; Sergi Munné-Bosch
Journal:  Trends Plant Sci       Date:  2010-08-21       Impact factor: 18.313

2.  Characterization and evolution of 5' and 3' untranslated regions in eukaryotes.

Authors:  Honglei Liu; Jiaming Yin; Meili Xiao; Caihua Gao; Annaliese S Mason; Zunkang Zhao; Yingchun Liu; Jiana Li; Donghui Fu
Journal:  Gene       Date:  2012-07-27       Impact factor: 3.688

3.  Translational control via protein-regulated upstream open reading frames.

Authors:  Jan Medenbach; Markus Seiler; Matthias W Hentze
Journal:  Cell       Date:  2011-06-10       Impact factor: 41.582

4.  Variation in ascorbic acid and oxalate levels in the fruit of Actinidia chinensis tissues and genotypes.

Authors:  Maysoon Rassam; William Laing
Journal:  J Agric Food Chem       Date:  2005-03-23       Impact factor: 5.279

5.  Gene expression of ascorbic acid-related enzymes in tobacco.

Authors:  Kazufumi Tabata; Takahiko Takaoka; Muneharu Esaka
Journal:  Phytochemistry       Date:  2002-11       Impact factor: 4.072

Review 6.  Ribozymes and riboswitches: modulation of RNA function by small molecules.

Authors:  Jinwei Zhang; Matthew W Lau; Adrian R Ferré-D'Amaré
Journal:  Biochemistry       Date:  2010-11-02       Impact factor: 3.162

7.  A highly specific L-galactose-1-phosphate phosphatase on the path to ascorbate biosynthesis.

Authors:  William A Laing; Sean Bulley; Michele Wright; Janine Cooney; Dwayne Jensen; Di Barraclough; Elspeth MacRae
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-18       Impact factor: 11.205

8.  Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis.

Authors:  Piyada Juntawong; Thomas Girke; Jérémie Bazin; Julia Bailey-Serres
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-23       Impact factor: 11.205

9.  Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.

Authors:  Jeremy Goecks; Anton Nekrutenko; James Taylor
Journal:  Genome Biol       Date:  2010-08-25       Impact factor: 13.583

10.  Conserved upstream open reading frames in higher plants.

Authors:  Michael K Tran; Carolyn J Schultz; Ute Baumann
Journal:  BMC Genomics       Date:  2008-07-31       Impact factor: 3.969

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  59 in total

1.  Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame.

Authors:  Rodrigo S Reis; Jules Deforges; Tatiana Sokoloff; Yves Poirier
Journal:  Plant Physiol       Date:  2020-04-23       Impact factor: 8.340

2.  A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.

Authors:  Pamela A Ribone; Matías Capella; Agustín L Arce; Raquel L Chan
Journal:  Plant Physiol       Date:  2017-09-27       Impact factor: 8.340

3.  Plant biology: Coding in non-coding RNAs.

Authors:  Peter M Waterhouse; Roger P Hellens
Journal:  Nature       Date:  2015-03-25       Impact factor: 49.962

4.  Metabolite Control of Translation by Conserved Peptide uORFs: The Ribosome as a Metabolite Multisensor.

Authors:  Sjors van der Horst; Teodora Filipovska; Johannes Hanson; Sjef Smeekens
Journal:  Plant Physiol       Date:  2019-08-26       Impact factor: 8.340

5.  Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis.

Authors:  Polly Yingshan Hsu; Lorenzo Calviello; Hsin-Yen Larry Wu; Fay-Wei Li; Carl J Rothfels; Uwe Ohler; Philip N Benfey
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-21       Impact factor: 11.205

6.  Identification and in silico characterization of cis-acting elements of genes involved in carotenoid biosynthesis in tomato.

Authors:  Archana Koul; Deepak Sharma; Sanjana Kaul; Manoj K Dhar
Journal:  3 Biotech       Date:  2019-06-26       Impact factor: 2.406

Review 7.  Conserved Upstream Open Reading Frame Nascent Peptides That Control Translation.

Authors:  Thomas E Dever; Ivaylo P Ivanov; Matthew S Sachs
Journal:  Annu Rev Genet       Date:  2020-09-01       Impact factor: 16.830

8.  Ascorbate biosynthesis and its involvement in stress tolerance and plant development in rice (Oryza sativa L.).

Authors:  Stefanie Höller; Yoshiaki Ueda; Linbo Wu; Yunxia Wang; Mohammad-Reza Hajirezaei; Mohammad-Reza Ghaffari; Nicolaus von Wirén; Michael Frei
Journal:  Plant Mol Biol       Date:  2015-07-01       Impact factor: 4.076

9.  Polyamine Control of Translation Elongation Regulates Start Site Selection on Antizyme Inhibitor mRNA via Ribosome Queuing.

Authors:  Ivaylo P Ivanov; Byung-Sik Shin; Gary Loughran; Ioanna Tzani; Sara K Young-Baird; Chune Cao; John F Atkins; Thomas E Dever
Journal:  Mol Cell       Date:  2018-04-19       Impact factor: 17.970

10.  Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis.

Authors:  Xiang Yu; Matthew R Willmann; Stephen J Anderson; Brian D Gregory
Journal:  Plant Cell       Date:  2016-10-07       Impact factor: 11.277

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