Literature DB >> 18772429

Shadow enhancers as a source of evolutionary novelty.

Joung-Woo Hong1, David A Hendrix, Michael S Levine.   

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Year:  2008        PMID： 18772429      PMCID： PMC4257485          DOI： 10.1126/science.1160631

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


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  6 in total

1.  Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo.

Authors:  Michele Markstein; Peter Markstein; Vicky Markstein; Michael S Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-18       Impact factor: 11.205

2.  Redundant and unique roles of two enhancer elements in the TCRgamma locus in gene regulation and gammadelta T cell development.

Authors:  Na Xiong; Chulho Kang; David H Raulet
Journal:  Immunity       Date:  2002-03       Impact factor: 31.745

3.  Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo.

Authors:  Angelike Stathopoulos; Madeleine Van Drenth; Albert Erives; Michele Markstein; Michael Levine
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

4.  Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.

Authors:  Julia Zeitlinger; Robert P Zinzen; Alexander Stark; Manolis Kellis; Hailan Zhang; Richard A Young; Michael Levine
Journal:  Genes Dev       Date:  2007-02-15       Impact factor: 11.361

5.  A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers.

Authors:  Yongsu Jeong; Kenia El-Jaick; Erich Roessler; Maximilian Muenke; Douglas J Epstein
Journal:  Development       Date:  2006-01-11       Impact factor: 6.868

6.  The evolution of gene regulation underlies a morphological difference between two Drosophila sister species.

Authors:  Sangyun Jeong; Mark Rebeiz; Peter Andolfatto; Thomas Werner; John True; Sean B Carroll
Journal:  Cell       Date:  2008-03-07       Impact factor: 41.582
  6 in total
  233 in total

1.  A computational pipeline for comparative ChIP-seq analyses.

Authors:  Anaïs F Bardet; Qiye He; Julia Zeitlinger; Alexander Stark
Journal:  Nat Protoc       Date:  2011-12-15       Impact factor: 13.491

Review 2.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

Review 3.  Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence.

Authors:  Patricia J Wittkopp; Gizem Kalay
Journal:  Nat Rev Genet       Date:  2011-12-06       Impact factor: 53.242

4.  Transcriptional repression via antilooping in the Drosophila embryo.

Authors:  Vivek S Chopra; Nikki Kong; Michael Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

5.  Information processing at the foxa node of the sea urchin endomesoderm specification network.

Authors:  Smadar Ben-Tabou de-Leon; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

6.  An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.

Authors:  Manonmani Arunachalam; Karthik Jayasurya; Pavel Tomancak; Uwe Ohler
Journal:  Bioinformatics       Date:  2010-07-11       Impact factor: 6.937

7.  A Multiplexed Assay for Exon Recognition Reveals that an Unappreciated Fraction of Rare Genetic Variants Cause Large-Effect Splicing Disruptions.

Authors:  Rocky Cheung; Kimberly D Insigne; David Yao; Christina P Burghard; Jeffrey Wang; Yun-Hua E Hsiao; Eric M Jones; Daniel B Goodman; Xinshu Xiao; Sriram Kosuri
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

8.  Neurogenin 1 (Neurog1) expression in the ventral neural tube is mediated by a distinct enhancer and preferentially marks ventral interneuron lineages.

Authors:  Herson I Quiñones; Trisha K Savage; James Battiste; Jane E Johnson
Journal:  Dev Biol       Date:  2010-02-18       Impact factor: 3.582

Review 9.  How the Dorsal gradient works: insights from postgenome technologies.

Authors:  Joung-Woo Hong; David A Hendrix; Dmitri Papatsenko; Michael S Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-22       Impact factor: 11.205

10.  Disrupting the three-dimensional regulatory topology of the Pitx1 locus results in overtly normal development.

Authors:  Richard Sarro; Acadia A Kocher; Deena Emera; Severin Uebbing; Emily V Dutrow; Scott D Weatherbee; Timothy Nottoli; James P Noonan
Journal:  Development       Date:  2018-04-09       Impact factor: 6.868
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