Literature DB >> 18752238

Mechanism of fast peptide recognition by SH3 domains.

Mazen Ahmad1, Wei Gu, Volkhard Helms.   

Abstract

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Year:  2008        PMID： 18752238     DOI： 10.1002/anie.200801856

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  32 in total

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Review 2.  Modeling protein association mechanisms and kinetics.

Authors:  Huan-Xiang Zhou; Paul A Bates
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3.  Modeling protein-peptide recognition based on classical quantitative structure-affinity relationship approach: implication for proteome-wide inference of peptide-mediated interactions.

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Journal:  Protein J       Date:  2013-10       Impact factor: 2.371

4.  Complete reconstruction of an enzyme-inhibitor binding process by molecular dynamics simulations.

Authors:  Ignasi Buch; Toni Giorgino; Gianni De Fabritiis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

5.  Pathway and mechanism of drug binding to G-protein-coupled receptors.

Authors:  Ron O Dror; Albert C Pan; Daniel H Arlow; David W Borhani; Paul Maragakis; Yibing Shan; Huafeng Xu; David E Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-21       Impact factor: 11.205

6.  The dock-and-coalesce mechanism for the association of a WASP disordered region with the Cdc42 GTPase.

Authors:  Li Ou; Megan Matthews; Xiaodong Pang; Huan-Xiang Zhou
Journal:  FEBS J       Date:  2017-08-30       Impact factor: 5.542

7.  Mechanism of the Association Pathways for a Pair of Fast and Slow Binding Ligands of HIV-1 Protease.

Authors:  Yu-Ming M Huang; Mark Anthony V Raymundo; Wei Chen; Chia-En A Chang
Journal:  Biochemistry       Date:  2017-02-21       Impact factor: 3.162

8.  Dissociation of a Dynamic Protein Complex Studied by All-Atom Molecular Simulations.

Authors:  Liqun Zhang; Susmita Borthakur; Matthias Buck
Journal:  Biophys J       Date:  2016-02-23       Impact factor: 4.033

9.  Adhesive water networks facilitate binding of protein interfaces.

Authors:  Mazen Ahmad; Wei Gu; Tihamér Geyer; Volkhard Helms
Journal:  Nat Commun       Date:  2011-03-29       Impact factor: 14.919

10.  Peptide Gaussian accelerated molecular dynamics (Pep-GaMD): Enhanced sampling and free energy and kinetics calculations of peptide binding.

Authors:  Jinan Wang; Yinglong Miao
Journal:  J Chem Phys       Date:  2020-10-21       Impact factor: 3.488
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