Literature DB >> 1875162

Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. II. Time hierarchy, enzymatic rate laws, and erythrocyte metabolism.

S Schuster1, R Schuster, R Heinrich.   

Abstract

The multiobjective problem of minimizing all intermediate concentrations is solved for a model of glycolysis, the pentose monophosphate shunt and the glutathione system in human erythrocytes. It turns out that one solution out of four obtained corresponds qualitatively to the real system. Furthermore, it is shown that for any reaction system, the mentioned optimality principle implies distinct time hierarchy in that some reactions are infinitely fast and subsist in quasi-equilibrium. Finally, the relationships to the standard method of deriving enzymatic rate laws are discussed.

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Year:  1991        PMID: 1875162     DOI: 10.1007/BF00160471

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  13 in total

1.  METABOLIC CONTROL MECHANISMS. VII.A DETAILED COMPUTER MODEL OF THE GLYCOLYTIC PATHWAY IN ASCITES CELLS.

Authors:  D GARFINKEL; B HESS
Journal:  J Biol Chem       Date:  1964-04       Impact factor: 5.157

Review 2.  Cellular concentrations of enzymes and their substrates.

Authors:  K R Albe; M H Butler; B E Wright
Journal:  J Theor Biol       Date:  1990-03-22       Impact factor: 2.691

3.  Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. II. Time hierarchy, enzymatic rate laws, and erythrocyte metabolism.

Authors:  S Schuster; R Schuster; R Heinrich
Journal:  J Math Biol       Date:  1991       Impact factor: 2.259

4.  Evolution of enzyme function and the development of catalytic efficiency.

Authors:  W J Albery; J R Knowles
Journal:  Biochemistry       Date:  1976-12-14       Impact factor: 3.162

Review 5.  Metabolic regulation and mathematical models.

Authors:  R Heinrich; S M Rapoport; T A Rapoport
Journal:  Prog Biophys Mol Biol       Date:  1977       Impact factor: 3.667

6.  Models describing the kinetics of ribulose biphosphate carboxylase-oxygenase.

Authors:  G D Farquhar
Journal:  Arch Biochem Biophys       Date:  1979-04-01       Impact factor: 4.013

7.  Studies on erythrocyte glycolysis. II. Free energy changes and rate limitings steps in erythrocyte glycolysis.

Authors:  S Minakami; H Yoshikawa
Journal:  J Biochem       Date:  1966-02       Impact factor: 3.387

8.  A mathematical model for the influence of fructose 6-phosphate, ATP, potassium, ammonium and magnesium on the phosphofructokinase from rat erythrocytes;.

Authors:  M Otto; R Heinrich; B KUHN; G Jacobasch
Journal:  Eur J Biochem       Date:  1974-11-01

9.  Dynamic stability of steady states and static stabilization in unbranched metabolic pathways.

Authors:  B F Dibrov; A M Zhabotinsky; B N Kholodenko
Journal:  J Math Biol       Date:  1982       Impact factor: 2.259

10.  Redox metabolism of glutathione in the red blood cell.

Authors:  K Kothe; C Sachsenröder; J G Reich
Journal:  Acta Biol Med Ger       Date:  1975
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  13 in total

1.  The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools.

Authors:  Iman Famili; Bernhard O Palsson
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

2.  Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. II. Time hierarchy, enzymatic rate laws, and erythrocyte metabolism.

Authors:  S Schuster; R Schuster; R Heinrich
Journal:  J Math Biol       Date:  1991       Impact factor: 2.259

3.  Use of game-theoretical methods in biochemistry and biophysics.

Authors:  Stefan Schuster; Jan-Ulrich Kreft; Anja Schroeter; Thomas Pfeiffer
Journal:  J Biol Phys       Date:  2008-08-06       Impact factor: 1.365

4.  Identifying the preferred subset of enzymatic profiles in nonlinear kinetic metabolic models via multiobjective global optimization and Pareto filters.

Authors:  Carlos Pozo; Gonzalo Guillén-Gosálbez; Albert Sorribas; Laureano Jiménez
Journal:  PLoS One       Date:  2012-09-20       Impact factor: 3.240

5.  The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization.

Authors:  Elad Noor; Avi Flamholz; Arren Bar-Even; Dan Davidi; Ron Milo; Wolfram Liebermeister
Journal:  PLoS Comput Biol       Date:  2016-11-03       Impact factor: 4.475

6.  Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks.

Authors:  Hulda S Haraldsdóttir; Ronan M T Fleming
Journal:  PLoS Comput Biol       Date:  2016-11-21       Impact factor: 4.475

7.  Redesigning metabolism based on orthogonality principles.

Authors:  Aditya Vikram Pandit; Shyam Srinivasan; Radhakrishnan Mahadevan
Journal:  Nat Commun       Date:  2017-05-30       Impact factor: 14.919

8.  Use of physiological constraints to identify quantitative design principles for gene expression in yeast adaptation to heat shock.

Authors:  Ester Vilaprinyo; Rui Alves; Albert Sorribas
Journal:  BMC Bioinformatics       Date:  2006-04-03       Impact factor: 3.169

9.  Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load.

Authors:  Naama Tepper; Elad Noor; Daniel Amador-Noguez; Hulda S Haraldsdóttir; Ron Milo; Josh Rabinowitz; Wolfram Liebermeister; Tomer Shlomi
Journal:  PLoS One       Date:  2013-09-26       Impact factor: 3.240

10.  Which sets of elementary flux modes form thermodynamically feasible flux distributions?

Authors:  Matthias P Gerstl; Christian Jungreuthmayer; Stefan Müller; Jürgen Zanghellini
Journal:  FEBS J       Date:  2016-03-31       Impact factor: 5.542

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