Literature DB >> 18728394

An intrinsic checkpoint model for regulation of replication origins.

Nicholas Rhind1.   

Abstract

A recent paper by Alvino et al., (MCB 2007; 27:6396) challenges the standard model of the DNA replication checkpoint. Their work shows that the checkpoint does not simply prevent late origins from firing in the presence of the nucleotide synthesis inhibitor hydroxyurea; instead it delays origin firing to maintain the regular order of origin firing relative to the now much slower rate of fork elongation. To explain these results, this perspective proposes a model in which the timing of origin firing is intrinsically coupled to the rate of fork elongation by the fact that late origins can only fire after early forks have terminated and released some essential replisome factor. This coupling fails in a checkpoint mutant background because stalled forks disassemble and release replisome factors prematurely, allowing for unregulated origin firing.

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Year:  2008        PMID: 18728394      PMCID: PMC2861552          DOI: 10.4161/cc.7.17.6624

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  12 in total

Review 1.  Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem.

Authors:  Olivier Hyrien; Kathrin Marheineke; Arach Goldar
Journal:  Bioessays       Date:  2003-02       Impact factor: 4.345

2.  Replication in hydroxyurea: it's a matter of time.

Authors:  Gina M Alvino; David Collingwood; John M Murphy; Jeffrey Delrow; Bonita J Brewer; M K Raghuraman
Journal:  Mol Cell Biol       Date:  2007-07-16       Impact factor: 4.272

3.  Genome-wide replication profiles of S-phase checkpoint mutants reveal fragile sites in yeast.

Authors:  Miruthubashini Raveendranathan; Sharbani Chattopadhyay; Yung-Tsi Bolon; Justin Haworth; Duncan J Clarke; Anja-Katrin Bielinsky
Journal:  EMBO J       Date:  2006-08-03       Impact factor: 11.598

4.  Replisome instability, fork collapse, and gross chromosomal rearrangements arise synergistically from Mec1 kinase and RecQ helicase mutations.

Authors:  Jennifer A Cobb; Thomas Schleker; Vanesa Rojas; Lotte Bjergbaek; José Antonio Tercero; Susan M Gasser
Journal:  Genes Dev       Date:  2005-12-15       Impact factor: 11.361

5.  Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects.

Authors:  José M Sogo; Massimo Lopes; Marco Foiani
Journal:  Science       Date:  2002-07-26       Impact factor: 47.728

6.  The RAD9 gene controls the cell cycle response to DNA damage in Saccharomyces cerevisiae.

Authors:  T A Weinert; L H Hartwell
Journal:  Science       Date:  1988-07-15       Impact factor: 47.728

7.  A central role for DNA replication forks in checkpoint activation and response.

Authors:  José Antonio Tercero; Maria Pia Longhese; John F X Diffley
Journal:  Mol Cell       Date:  2003-05       Impact factor: 17.970

Review 8.  The Rad53 signal transduction pathway: Replication fork stabilization, DNA repair, and adaptation.

Authors:  Dana Branzei; Marco Foiani
Journal:  Exp Cell Res       Date:  2006-06-20       Impact factor: 3.905

9.  Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication.

Authors:  Wenyi Feng; David Collingwood; Max E Boeck; Lindsay A Fox; Gina M Alvino; Walton L Fangman; Mosur K Raghuraman; Bonita J Brewer
Journal:  Nat Cell Biol       Date:  2006-01-22       Impact factor: 28.824

10.  The DNA replication checkpoint response stabilizes stalled replication forks.

Authors:  M Lopes; C Cotta-Ramusino; A Pellicioli; G Liberi; P Plevani; M Muzi-Falconi; C S Newlon; M Foiani
Journal:  Nature       Date:  2001-08-02       Impact factor: 49.962

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  4 in total

1.  Reconciling stochastic origin firing with defined replication timing.

Authors:  Nicholas Rhind; Scott Cheng-Hsin Yang; John Bechhoefer
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

2.  Molecular analysis of the replication program in unicellular model organisms.

Authors:  M K Raghuraman; Bonita J Brewer
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

3.  Replication timing is regulated by the number of MCMs loaded at origins.

Authors:  Shankar P Das; Tyler Borrman; Victor W T Liu; Scott C-H Yang; John Bechhoefer; Nicholas Rhind
Journal:  Genome Res       Date:  2015-09-10       Impact factor: 9.043

4.  Checkpoint-independent scaling of the Saccharomyces cerevisiae DNA replication program.

Authors:  Ariel Gispan; Miri Carmi; Naama Barkai
Journal:  BMC Biol       Date:  2014-10-07       Impact factor: 7.431

  4 in total

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