Literature DB >> 18723649

Extensive genome rearrangements and multiple horizontal gene transfers in a population of pyrococcus isolates from Vulcano Island, Italy.

James R White1, Patricia Escobar-Paramo, Emmanuel F Mongodin, Karen E Nelson, Jocelyne DiRuggiero.   

Abstract

The extent of chromosome rearrangements in Pyrococcus isolates from marine hydrothermal vents in Vulcano Island, Italy, was evaluated by high-throughput genomic methods. The results illustrate the dynamic nature of the genomes of the genus Pyrococcus and raise the possibility of a connection between rapidly changing environmental conditions and adaptive genomic properties.

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Year:  2008        PMID： 18723649      PMCID： PMC2570278          DOI： 10.1128/AEM.01024-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  36 in total

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Authors:  E Martusewitsch; C W Sensen; C Schleper
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2.  Adaptive evolution of highly mutable loci in pathogenic bacteria.

Authors:  E R Moxon; R E Lenski; P B Rainey
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3.  A putative viral defence mechanism in archaeal cells.

Authors:  Reidun K Lillestøl; Peter Redder; Roger A Garrett; Kim Brügger
Journal:  Archaea       Date:  2006-08       Impact factor: 3.273

4.  Mutations and rearrangements in the genome of Sulfolobus solfataricus P2.

Authors:  Peter Redder; Roger A Garrett
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

5.  Community genomics among stratified microbial assemblages in the ocean's interior.

Authors:  Edward F DeLong; Christina M Preston; Tracy Mincer; Virginia Rich; Steven J Hallam; Niels-Ulrik Frigaard; Asuncion Martinez; Matthew B Sullivan; Robert Edwards; Beltran Rodriguez Brito; Sallie W Chisholm; David M Karl
Journal:  Science       Date:  2006-01-27       Impact factor: 47.728

6.  Genomic islands and the ecology and evolution of Prochlorococcus.

Authors:  Maureen L Coleman; Matthew B Sullivan; Adam C Martiny; Claudia Steglich; Kerrie Barry; Edward F Delong; Sallie W Chisholm
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7.  Fossil genes and microbes in the oldest ice on earth.

Authors:  Kay D Bidle; Sanghoon Lee; David R Marchant; Paul G Falkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-08       Impact factor: 11.205

Review 8.  CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

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9.  Evidence of recent lateral gene transfer among hyperthermophilic archaea.

Authors:  J Diruggiero; D Dunn; D L Maeder; R Holley-Shanks; J Chatard; R Horlacher; F T Robb; W Boos; R B Weiss
Journal:  Mol Microbiol       Date:  2000-11       Impact factor: 3.501

10.  Characterization of plasmid pRT1 from Pyrococcus sp. strain JT1.

Authors:  Donald E Ward; Ingrid M Revet; Renu Nandakumar; Jon H Tuttle; Willem M de Vos; John van der Oost; Jocelyne DiRuggiero
Journal:  J Bacteriol       Date:  2002-05       Impact factor: 3.490
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  11 in total

Review 1.  How hyperthermophiles adapt to change their lives: DNA exchange in extreme conditions.

Authors:  Marleen van Wolferen; Małgorzata Ajon; Arnold J M Driessen; Sonja-Verena Albers
Journal:  Extremophiles       Date:  2013-05-28       Impact factor: 2.395

2.  A molecular and physiological survey of a diverse collection of hydrothermal vent Thermococcus and Pyrococcus isolates.

Authors:  Andreas Teske; Virginia Edgcomb; Adam R Rivers; Janelle R Thompson; Alvin de Vera Gomez; Stephen J Molyneaux; Carl O Wirsen
Journal:  Extremophiles       Date:  2009-09-11       Impact factor: 2.395

3.  Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome.

Authors:  Stephanie L Bridger; W Andrew Lancaster; Farris L Poole; Gerrit J Schut; Michael W W Adams
Journal:  J Bacteriol       Date:  2012-05-25       Impact factor: 3.490

4.  Pyrococcus furiosus flagella: biochemical and transcriptional analyses identify the newly detected flaB0 gene to encode the major flagellin.

Authors:  Daniela J Näther-Schindler; Simone Schopf; Annett Bellack; Reinhard Rachel; Reinhard Wirth
Journal:  Front Microbiol       Date:  2014-12-11       Impact factor: 5.640

5.  Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus.

Authors:  Robert Reichelt; Antonia Gindner; Michael Thomm; Winfried Hausner
Journal:  BMC Genomics       Date:  2016-01-08       Impact factor: 3.969

6.  Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents.

Authors:  Rika E Anderson; Julie Reveillaud; Emily Reddington; Tom O Delmont; A Murat Eren; Jill M McDermott; Jeff S Seewald; Julie A Huber
Journal:  Nat Commun       Date:  2017-10-24       Impact factor: 14.919

7.  Evolution of Genome Architecture in Archaea: Spontaneous Generation of a New Chromosome in Haloferax volcanii.

Authors:  Darya Ausiannikava; Laura Mitchell; Hannah Marriott; Victoria Smith; Michelle Hawkins; Kira S Makarova; Eugene V Koonin; Conrad A Nieduszynski; Thorsten Allers
Journal:  Mol Biol Evol       Date:  2018-08-01       Impact factor: 16.240

8.  Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions.

Authors:  Konstantin V Gunbin; Dmitry A Afonnikov; Nikolay A Kolchanov
Journal:  BMC Genomics       Date:  2009-12-30       Impact factor: 3.969

9.  Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase.

Authors:  Antonio Placido; Tran Hai; Manuel Ferrer; Tatyana N Chernikova; Marco Distaso; Dale Armstrong; Alexander F Yakunin; Stepan V Toshchakov; Michail M Yakimov; Ilya V Kublanov; Olga V Golyshina; Graziano Pesole; Luigi R Ceci; Peter N Golyshin
Journal:  Appl Microbiol Biotechnol       Date:  2015-08-13       Impact factor: 4.813

10.  An Integrative Genomic Island Affects the Adaptations of the Piezophilic Hyperthermophilic Archaeon Pyrococcus yayanosii to High Temperature and High Hydrostatic Pressure.

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Journal:  Front Microbiol       Date:  2016-11-29       Impact factor: 5.640
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