Literature DB >> 18723053

Macromolecular crowding and its potential impact on nuclear function.

Karsten Richter1, Michelle Nessling, Peter Lichter.   

Abstract

It is well established, that biochemical reactions are dependent on pH, ionic strength, temperature and the concentration of reactants. However, the steric repulsion among bulky components of biological systems also affect biochemical behavior: The 'excluded volume effect of macromolecular crowding' drives bulky components into structurally compact organizations, increases their thermodynamic activities and slows down diffusion. The very special composition of the cell nucleus, which is packed with high-molecular chromatin, ribonucleo-particles and associated proteins, suggests that crowding-effects are part of nuclear functionality. Realizing that many nuclear processes, notably gene transcription, hnRNA splicing and DNA replication, use macromolecular machines, and taking into account that macromolecular crowding provides a cooperative momentum for the assembly of macromolecular complexes, we here elaborate why macromolecular crowding may be functionally important in supporting the statistical significance of nuclear activities.

Mesh:

Substances:

Year:  2008        PMID: 18723053     DOI: 10.1016/j.bbamcr.2008.07.017

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  44 in total

Review 1.  Chromatin higher-order structure and dynamics.

Authors:  Christopher L Woodcock; Rajarshi P Ghosh
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04-07       Impact factor: 10.005

2.  Balbiani ring mRNPs diffuse through and bind to clusters of large intranuclear molecular structures.

Authors:  Roman Veith; Thomas Sorkalla; Eugen Baumgart; Johannes Anzt; Hanns Häberlein; Sanjay Tyagi; Jan Peter Siebrasse; Ulrich Kubitscheck
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

3.  XLF regulates filament architecture of the XRCC4·ligase IV complex.

Authors:  Michal Hammel; Yaping Yu; Shujuan Fang; Susan P Lees-Miller; John A Tainer
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

Review 4.  Chromosome crosstalk in three dimensions.

Authors:  Anita Göndör; Rolf Ohlsson
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

5.  Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin.

Authors:  Aurélien Bancaud; Sébastien Huet; Nathalie Daigle; Julien Mozziconacci; Joël Beaudouin; Jan Ellenberg
Journal:  EMBO J       Date:  2009-12-16       Impact factor: 11.598

6.  Kirkwood-Buff theory of molecular and protein association, aggregation, and cellular crowding.

Authors:  Moon Bae Gee; Paul E Smith
Journal:  J Chem Phys       Date:  2009-10-28       Impact factor: 3.488

7.  4D chromatin dynamics in cycling cells: Theodor Boveri's hypotheses revisited.

Authors:  Hilmar Strickfaden; Andreas Zunhammer; Silvana van Koningsbruggen; Daniela Köhler; Thomas Cremer
Journal:  Nucleus       Date:  2010-04-06       Impact factor: 4.197

8.  Power-law dependence of the melting temperature of ubiquitin on the volume fraction of macromolecular crowders.

Authors:  Matthias M Waegele; Feng Gai
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

9.  Compaction of Single-Molecule Megabase-Long Chromatin under the Influence of Macromolecular Crowding.

Authors:  Anatoly Zinchenko; Nikolay V Berezhnoy; Qinming Chen; Lars Nordenskiöld
Journal:  Biophys J       Date:  2018-05-03       Impact factor: 4.033

10.  Protein Tpr is required for establishing nuclear pore-associated zones of heterochromatin exclusion.

Authors:  Sandra Krull; Julia Dörries; Björn Boysen; Sonja Reidenbach; Lars Magnius; Helene Norder; Johan Thyberg; Volker C Cordes
Journal:  EMBO J       Date:  2010-04-20       Impact factor: 11.598

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