Literature DB >> 18717597

Incorporation of hydrostatic pressure into models of hydrogen tunneling highlights a role for pressure-modulated promoting vibrations.

Sam Hay1, Nigel S Scrutton.   

Abstract

Hydrostatic pressure offers an alternative to temperature as an experimental probe of hydrogen-transfer reactions. H tunneling reactions have been shown to exhibit kinetic isotope effects (KIEs) that are sensitive to pressure, and environmentally coupled H tunneling reactions, those reactions in which H transfer is coupled to atomic fluctuations (a promoting vibration) along the reaction coordinate, often have quite temperature-dependent KIEs. We present here a theoretical treatment of the combined effect of temperature and pressure on environmentally coupled H tunneling reactions. We develop a generalized expression for the KIE, which can be used as a simple fitting function for combined experimental temperature- and pressure-dependent KIE data sets. With this expression, we are able to extract information about the pressure dependence of both the apparent tunneling distance and the frequency of the promoting vibration. The KIE expression is tested on two data sets {the reduction of chloranil by leuco crystal violet [Isaacs, N. S., Javaid, K., and Rannala, E. (1998) J. Chem. Soc., Perkin Trans. 2, 709-711] and the reduction of morphinone reductase by NADH [Hay, S., Sutcliffe, M. J., and Scrutton, N. S. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 507-512]} and suggests that hydrostatic pressure is a sensitive probe of nuclear quantum mechanical effects in H-transfer reactions.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18717597     DOI: 10.1021/bi8005972

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  Good vibrations in enzyme-catalysed reactions.

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

2.  Evidence for substrate preorganization in the peptidylglycine α-amidating monooxygenase reaction describing the contribution of ground state structure to hydrogen tunneling.

Authors:  Neil R McIntyre; Edward W Lowe; Jonathan L Belof; Milena Ivkovic; Jacob Shafer; Brian Space; David J Merkler
Journal:  J Am Chem Soc       Date:  2010-11-02       Impact factor: 15.419

3.  Barrier compression and its contribution to both classical and quantum mechanical aspects of enzyme catalysis.

Authors:  Sam Hay; Linus O Johannissen; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

4.  Analysis of Hydrogen Tunneling in an Enzyme Active Site using von Neumann Measurements.

Authors:  Isaiah Sumner; Srinivasan S Iyengar
Journal:  J Chem Theory Comput       Date:  2010       Impact factor: 6.006

Review 5.  Hydrogen tunneling links protein dynamics to enzyme catalysis.

Authors:  Judith P Klinman; Amnon Kohen
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

6.  Effect of osmolytes on protein dynamics in the lactate dehydrogenase-catalyzed reaction.

Authors:  Nickolay Zhadin; Robert Callender
Journal:  Biochemistry       Date:  2011-02-09       Impact factor: 3.162

7.  Effects of the donor-acceptor distance and dynamics on hydride tunneling in the dihydrofolate reductase catalyzed reaction.

Authors:  Vanja Stojković; Laura L Perissinotti; Daniel Willmer; Stephen J Benkovic; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2012-01-17       Impact factor: 15.419

Review 8.  Promoting Vibrations and the Function of Enzymes. Emerging Theoretical and Experimental Convergence.

Authors:  Vern L Schramm; Steven D Schwartz
Journal:  Biochemistry       Date:  2018-04-10       Impact factor: 3.162

9.  Probing active site geometry using high pressure and secondary isotope effects in an enzyme-catalysed 'deep' H-tunnelling reaction.

Authors:  Sam Hay; Christopher R Pudney; Michael J Sutcliffe; Nigel S Scrutton
Journal:  J Phys Org Chem       Date:  2010-07-01       Impact factor: 2.391

Review 10.  Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.

Authors:  Andrew Currin; Neil Swainston; Philip J Day; Douglas B Kell
Journal:  Chem Soc Rev       Date:  2015-03-07       Impact factor: 54.564

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.