Literature DB >> 18717596

Insight into the coupling mechanism of the vitamin K-dependent carboxylase: mutation of histidine 160 disrupts glutamic acid carbanion formation and efficient coupling of vitamin K epoxidation to glutamic acid carboxylation.

Mark A Rishavy1, Kathleen L Berkner.   

Abstract

Vitamin K-dependent (VKD) proteins become activated by the VKD carboxylase, which converts Glu's to carboxylated Glu's (Gla's) in their Gla domains. The carboxylase uses vitamin K epoxidation to drive Glu carboxylation, and the two half-reactions are coupled in 1:1 stoichiometry by an unknown mechanism. We now report the first identification of a residue, His160, required for coupling. A H160A mutant showed wild-type levels of epoxidation but substantially less carboxylation. Monitoring proton abstraction using a peptide with Glu tritiated at the gamma-carbon position revealed that poor coupling was due to impaired carbanion formation. H160A showed a 10-fold lower ratio of tritium release to vitamin K epoxidation than wild-type enzyme (i.e., 0.12 versus 1.14, respectively), which could fully account for the fold decrease in coupling efficiency. The Ala substitution in His160 did not affect the K m for vitamin K and caused only a 2-fold increase in the K m for Glu and 2-fold decrease in the activation of vitamin K epoxidation by Glu. The H160A K m for CO 2 was 5-fold higher than the wild-type enzyme. However, the k cat for H160A carboxylation was 8-9-fold lower than the wild-type enzyme with all three substrates (i.e., Glu, CO 2, and vitamin K), suggesting a catalytic role for His160 in carbanion formation. We propose that His160 facilitates the formation of the transition state for carbanion formation. His160 is highly conserved in metazoan VKD carboxylases but not in some bacterial orthologues (acquired by horizontal gene transfer), which has implications for how bacteria have adapted the carboxylase for novel functions.

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Year:  2008        PMID: 18717596      PMCID: PMC3293503          DOI: 10.1021/bi800296r

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  46 in total

1.  Tethered processivity of the vitamin K-dependent carboxylase: factor IX is efficiently modified in a mechanism which distinguishes Gla's from Glu's and which accounts for comprehensive carboxylation in vivo.

Authors:  O Stenina; B N Pudota; B A McNally; E L Hommema; K L Berkner
Journal:  Biochemistry       Date:  2001-08-28       Impact factor: 3.162

2.  HTTM, a horizontally transferred transmembrane domain.

Authors:  Jörg Schultz
Journal:  Trends Biochem Sci       Date:  2004-01       Impact factor: 13.807

3.  gamma -Glutamyl carboxylation: An extracellular posttranslational modification that antedates the divergence of molluscs, arthropods, and chordates.

Authors:  Pradip K Bandyopadhyay; James E Garrett; Reshma P Shetty; Tyler Keate; Craig S Walker; Baldomero M Olivera
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-29       Impact factor: 11.205

4.  Expression and characterization of recombinant vitamin K-dependent gamma-glutamyl carboxylase from an invertebrate, Conus textile.

Authors:  Eva Czerwiec; Gail S Begley; Mila Bronstein; Johan Stenflo; Kevin Taylor; Barbara C Furie; Bruce Furie
Journal:  Eur J Biochem       Date:  2002-12

5.  The putative vitamin K-dependent gamma-glutamyl carboxylase internal propeptide appears to be the propeptide binding site.

Authors:  Pen-Jen Lin; Da-Yun Jin; Jian-Ke Tie; Steven R Presnell; David L Straight; Darrel W Stafford
Journal:  J Biol Chem       Date:  2002-05-28       Impact factor: 5.157

6.  A conserved region of human vitamin K-dependent carboxylase between residues 393 and 404 is important for its interaction with the glutamate substrate.

Authors:  Vasantha P Mutucumarana; Francine Acher; David L Straight; Da-Yun Jin; Darrel W Stafford
Journal:  J Biol Chem       Date:  2003-09-10       Impact factor: 5.157

7.  Identification of a gene encoding a typical gamma-carboxyglutamic acid domain in the tunicate Halocynthia roretzi.

Authors:  C-P Wang; K Yagi; P J Lin; D Y Jin; K W Makabe; D W Stafford
Journal:  J Thromb Haemost       Date:  2003-01       Impact factor: 5.824

8.  Compound heterozygous mutations in the gamma-glutamyl carboxylase gene cause combined deficiency of all vitamin K-dependent blood coagulation factors.

Authors:  Simone Rost; Andreas Fregin; Dieter Koch; Markus Compes; Clemens R Müller; Johannes Oldenburg
Journal:  Br J Haematol       Date:  2004-08       Impact factor: 6.998

Review 9.  VKORC1: molecular target of coumarins.

Authors:  J Oldenburg; M Watzka; S Rost; C R Müller
Journal:  J Thromb Haemost       Date:  2007-07       Impact factor: 5.824

10.  The evolution of vertebrate blood coagulation as viewed from a comparison of puffer fish and sea squirt genomes.

Authors:  Yong Jiang; Russell F Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-13       Impact factor: 11.205

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  10 in total

1.  Methylation of γ-carboxylated Glu (Gla) allows detection by liquid chromatography-mass spectrometry and the identification of Gla residues in the γ-glutamyl carboxylase.

Authors:  K W Hallgren; D Zhang; M Kinter; B Willard; K L Berkner
Journal:  J Proteome Res       Date:  2013-05-10       Impact factor: 4.466

2.  Novel insight into the mechanism of the vitamin K oxidoreductase (VKOR): electron relay through Cys43 and Cys51 reduces VKOR to allow vitamin K reduction and facilitation of vitamin K-dependent protein carboxylation.

Authors:  Mark A Rishavy; Aisulu Usubalieva; Kevin W Hallgren; Kathleen L Berkner
Journal:  J Biol Chem       Date:  2010-10-26       Impact factor: 5.157

3.  Characterization of vitamin K-dependent carboxylase mutations that cause bleeding and nonbleeding disorders.

Authors:  Jian-Ke Tie; Jorge D A Carneiro; Da-Yun Jin; Ciro D Martinhago; Cees Vermeer; Darrel W Stafford
Journal:  Blood       Date:  2016-01-12       Impact factor: 22.113

Review 4.  Vitamin K oxygenation, glutamate carboxylation, and processivity: defining the three critical facets of catalysis by the vitamin K-dependent carboxylase.

Authors:  Mark A Rishavy; Kathleen L Berkner
Journal:  Adv Nutr       Date:  2012-03-01       Impact factor: 8.701

5.  The vitamin K-dependent carboxylase generates γ-carboxylated glutamates by using CO2 to facilitate glutamate deprotonation in a concerted mechanism that drives catalysis.

Authors:  Mark A Rishavy; Kevin W Hallgren; Kathleen L Berkner
Journal:  J Biol Chem       Date:  2011-09-06       Impact factor: 5.157

6.  Effect of vitamin K-dependent protein precursor propeptide, vitamin K hydroquinone, and glutamate substrate binding on the structure and function of {gamma}-glutamyl carboxylase.

Authors:  Shannon L Higgins-Gruber; Vasantha P Mutucumarana; Pen-Jen Lin; James W Jorgenson; Darrel W Stafford; David L Straight
Journal:  J Biol Chem       Date:  2010-08-17       Impact factor: 5.157

Review 7.  Vitamin K-Dependent Protein Activation: Normal Gamma-Glutamyl Carboxylation and Disruption in Disease.

Authors:  Kathleen L Berkner; Kurt W Runge
Journal:  Int J Mol Sci       Date:  2022-05-20       Impact factor: 6.208

8.  The vitamin K oxidoreductase is a multimer that efficiently reduces vitamin K epoxide to hydroquinone to allow vitamin K-dependent protein carboxylation.

Authors:  Mark A Rishavy; Kevin W Hallgren; Lee A Wilson; Aisulu Usubalieva; Kurt W Runge; Kathleen L Berkner
Journal:  J Biol Chem       Date:  2013-08-05       Impact factor: 5.157

9.  Vitamin K: an old vitamin in a new perspective.

Authors:  U Gröber; J Reichrath; M F Holick; K Kisters
Journal:  Dermatoendocrinol       Date:  2015-01-21

10.  A conformational investigation of propeptide binding to the integral membrane protein γ-glutamyl carboxylase using nanodisc hydrogen exchange mass spectrometry.

Authors:  Christine H Parker; Christopher R Morgan; Kasper D Rand; John R Engen; James W Jorgenson; Darrel W Stafford
Journal:  Biochemistry       Date:  2014-02-26       Impact factor: 3.162

  10 in total

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