Literature DB >> 18712276

Structural biology of the purine biosynthetic pathway.

Y Zhang1, M Morar, S E Ealick.   

Abstract

Purine biosynthesis requires ten enzymatic transformations to generate inosine monophosphate. PurF, PurD, PurL, PurM, PurC, and PurB are common to all pathways, while PurN or PurT, PurK/PurE-I or PurE-II, PurH or PurP, and PurJ or PurO catalyze the same steps in different organisms. X-ray crystal structures are available for all 15 purine biosynthetic enzymes, including 7 ATP-dependent enzymes, 2 amidotransferases and 2 tetrahydrofolate-dependent enzymes. Here we summarize the structures of the purine biosynthetic enzymes, discuss similarities and differences, and present arguments for pathway evolution. Four of the ATP-dependent enzymes belong to the ATP-grasp superfamily and 2 to the PurM superfamily. The amidotransferases are unrelated, with one utilizing an N-terminal nucleophileglutaminase and the other utilizing a triad glutaminase. Likewise the tetrahydrofolate-dependent enzymes are unrelated. Ancestral proteins may have included a broad specificity enzyme instead of PurD, PurT, PurK, PurC, and PurP, and a separate enzyme instead of PurM and PurL.

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Year:  2008        PMID: 18712276      PMCID: PMC2596281          DOI: 10.1007/s00018-008-8295-8

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  85 in total

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Journal:  Proteins       Date:  2006-06-01

3.  Biochemical and structural studies of N5-carboxyaminoimidazole ribonucleotide mutase from the acidophilic bacterium Acetobacter aceti.

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Journal:  Biochemistry       Date:  2006-07-11       Impact factor: 3.162

4.  X-ray crystal structure of aminoimidazole ribonucleotide synthetase (PurM), from the Escherichia coli purine biosynthetic pathway at 2.5 A resolution.

Authors:  C Li; T J Kappock; J Stubbe; T M Weaver; S E Ealick
Journal:  Structure       Date:  1999-09-15       Impact factor: 5.006

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Journal:  Biochemistry       Date:  1998-11-10       Impact factor: 3.162

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  80 in total

1.  Structure of N5-carboxyaminoimidazole ribonucleotide synthase (PurK) from Bacillus anthracis.

Authors:  Micheal L Tuntland; Michael E Johnson; L W-M Fung; Bernard D Santarsiero
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

2.  Structure of N-formylglycinamide ribonucleotide amidotransferase II (PurL) from Thermus thermophilus HB8.

Authors:  Sakiko Suzuki; Hisaaki Yanai; Mayumi Kanagawa; Satoko Tamura; Yuzo Watanabe; Kyotaro Fuse; Seiki Baba; Gen-ichi Sampei; Gota Kawai
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

3.  Expression, purification, crystallization and preliminary X-ray diffraction crystallographic study of PurH from Escherichia coli.

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5.  Structural insights into DndE from Escherichia coli B7A involved in DNA phosphorothioation modification.

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Journal:  Cell Res       Date:  2012-04-24       Impact factor: 25.617

6.  Characterization of the coformycin biosynthetic gene cluster in Streptomyces kaniharaensis.

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Journal:  Nature       Date:  2013-07-14       Impact factor: 49.962

8.  Role of purine biosynthesis in Bacillus anthracis pathogenesis and virulence.

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Journal:  Infect Immun       Date:  2010-11-01       Impact factor: 3.441

9.  Identification of Burkholderia cenocepacia strain H111 virulence factors using nonmammalian infection hosts.

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10.  Purine biosynthesis, biofilm formation, and persistence of an insect-microbe gut symbiosis.

Authors:  Jiyeun Kate Kim; Jeong Yun Kwon; Soo Kyoung Kim; Sang Heum Han; Yeo Jin Won; Joon Hee Lee; Chan-Hee Kim; Takema Fukatsu; Bok Luel Lee
Journal:  Appl Environ Microbiol       Date:  2014-05-09       Impact factor: 4.792

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