Literature DB >> 22232163

Structure of N-formylglycinamide ribonucleotide amidotransferase II (PurL) from Thermus thermophilus HB8.

Sakiko Suzuki1, Hisaaki Yanai, Mayumi Kanagawa, Satoko Tamura, Yuzo Watanabe, Kyotaro Fuse, Seiki Baba, Gen-ichi Sampei, Gota Kawai.   

Abstract

The crystal structure of PurL from Thermus thermophilus HB8 (TtPurL; TTHA1519) was determined in complex with an adenine nucleotide, PO(4)(3-) and Mg(2+) at 2.35 Å resolution. TtPurL consists of 29 α-helices and 28 β-strands, and one loop is disordered. TtPurL consists of four domains, A1, A2, B1 and B2, and the structures of the A1-B1 and A2-B2 domains were almost identical to each other. Although the sequence identity between TtPurL and PurL from Thermotoga maritima (TmPurL) is higher than that between TtPurL and the PurL domain of the large PurL from Salmonella typhimurium (StPurL), the secondary structure of TtPurL is much more similar to that of StPurL than to that of TmPurL.
© 2012 International Union of Crystallography. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22232163      PMCID: PMC3253826          DOI: 10.1107/S1744309111048184

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  ARP/wARP's model-building algorithms. I. The main chain.

Authors:  Richard J Morris; Anastassis Perrakis; Victor S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-05-29

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Biosynthesis of the purines. XXXI. Binding of formylglycinamide ribonucleotide and adenosine triphosphate to formylglycinamide ribonucleotide amidotransferase.

Authors:  K Mizobuchi; G L Kenyon; J M Buchanan
Journal:  J Biol Chem       Date:  1968-09-25       Impact factor: 5.157

4.  Cloning and characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis.

Authors:  D J Ebbole; H Zalkin
Journal:  J Biol Chem       Date:  1987-06-15       Impact factor: 5.157

5.  The yexA gene product is required for phosphoribosylformylglycinamidine synthetase activity in Bacillus subtilis.

Authors:  Hans H Saxild; Per Nygaard
Journal:  Microbiology       Date:  2000-04       Impact factor: 2.777

6.  Domain organization of Salmonella typhimurium formylglycinamide ribonucleotide amidotransferase revealed by X-ray crystallography.

Authors:  Ruchi Anand; Aaron A Hoskins; JoAnne Stubbe; Steven E Ealick
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

7.  The formylglycinamide ribonucleotide amidotransferase complex from Bacillus subtilis: metabolite-mediated complex formation.

Authors:  Aaron A Hoskins; Ruchi Anand; Steven E Ealick; JoAnne Stubbe
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

8.  A model for the Bacillus subtilis formylglycinamide ribonucleotide amidotransferase multiprotein complex.

Authors:  Ruchi Anand; Aaron A Hoskins; Eric M Bennett; Michael D Sintchak; JoAnne Stubbe; Steven E Ealick
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

9.  Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility.

Authors:  Atsushi Hijikata; Kei Yura; Tosiyuki Noguti; Mitiko Go
Journal:  Proteins       Date:  2011-04-04

10.  Automated main-chain model building by template matching and iterative fragment extension.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19
View more
  4 in total

1.  Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii.

Authors:  Yuzo Watanabe; Hisaaki Yanai; Mayumi Kanagawa; Sakiko Suzuki; Satoko Tamura; Kiyoshi Okada; Seiki Baba; Takashi Kumasaka; Yoshihiro Agari; Lirong Chen; Zheng Qing Fu; John Chrzas; Bi Cheng Wang; Noriko Nakagawa; Akio Ebihara; Ryoji Masui; Seiki Kuramitsu; Shigeyuki Yokoyama; Gen Ichi Sampei; Gota Kawai
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-07-27       Impact factor: 1.056

2.  Evolutionary convergence in the biosyntheses of the imidazole moieties of histidine and purines.

Authors:  Alberto Vázquez-Salazar; Arturo Becerra; Antonio Lazcano
Journal:  PLoS One       Date:  2018-04-26       Impact factor: 3.240

3.  Correlation between equi-partition of aminoacyl-tRNA synthetases and amino-acid biosynthesis pathways.

Authors:  Akio Takénaka; Dino Moras
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

4.  Boosting Auto-Induction of Recombinant Proteins in Escherichia coli with Glucose and Lactose Additives.

Authors:  Nariyasu Tahara; Itaru Tachibana; Kazuyo Takeo; Shinji Yamashita; Atsuhiro Shimada; Misuzu Hashimoto; Satoshi Ohno; Takashi Yokogawa; Tsutomu Nakagawa; Fumiaki Suzuki; Akio Ebihara
Journal:  Protein Pept Lett       Date:  2021       Impact factor: 1.890

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.