Literature DB >> 18693990

Coding free text radiology reports using the Cancer Text Information Extraction System (caTIES).

David Carrell1, Diana Miglioretti, Rebecca Smith-Bindman.   

Abstract

We coded 700 radiology reports from 373 women using an unmodified deployment of the Cancer Text Information Extraction System (caTIES), a publicly-available tool using natural language processing techniques. We were moderately successfully using caTIES for case ascertainment, successfully identifying 9/11 of a random sample of cancer case (sensitivity 82%) and 5/100 controls (specificity 95%) We are currently developing a classification scheme to assess clinical risk of ovarian cancer and identifying required extensions to caTIES algorithms.

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Year:  2007        PMID： 18693990

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN： 1559-4076


  11 in total

1.  Quantitative evaluation of expression difference in report assignments between nursing and radiologic technology departments.

Authors:  Naoki Nishimoto; Yuki Yokooka; Ayako Yagahara; Masahito Uesugi; Katsuhiko Ogasawara
Journal:  Radiol Phys Technol       Date:  2010-09-10

2.  Creation and storage of standards-based pre-scanning patient questionnaires in PACS as DICOM objects.

Authors:  Tracy J Robinson; Scott L DuVall; Richard H Wiggins
Journal:  J Digit Imaging       Date:  2011-10       Impact factor: 4.056

3.  Mining the pharmacogenomics literature--a survey of the state of the art.

Authors:  Udo Hahn; K Bretonnel Cohen; Yael Garten; Nigam H Shah
Journal:  Brief Bioinform       Date:  2012-07       Impact factor: 11.622

4.  Extracting timing and status descriptors for colonoscopy testing from electronic medical records.

Authors:  Joshua C Denny; Josh F Peterson; Neesha N Choma; Hua Xu; Randolph A Miller; Lisa Bastarache; Neeraja B Peterson
Journal:  J Am Med Inform Assoc       Date:  2010 Jul-Aug       Impact factor: 4.497

5.  ASLForm: an adaptive self learning medical form generating system.

Authors:  Shuai Zheng; Fusheng Wang; James J Lu
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

6.  Automated determination of metastases in unstructured radiology reports for eligibility screening in oncology clinical trials.

Authors:  Valentina I Petkov; Lynne T Penberthy; Bassam A Dahman; Andrew Poklepovic; Chris W Gillam; James H McDermott
Journal:  Exp Biol Med (Maywood)       Date:  2013-10-09

7.  Information Extraction for Clinical Data Mining: A Mammography Case Study.

Authors:  Houssam Nassif; Ryan Woods; Elizabeth Burnside; Mehmet Ayvaci; Jude Shavlik; David Page
Journal:  Proc IEEE Int Conf Data Min       Date:  2009

8.  Identifying primary and recurrent cancers using a SAS-based natural language processing algorithm.

Authors:  Justin A Strauss; Chun R Chao; Marilyn L Kwan; Syed A Ahmed; Joanne E Schottinger; Virginia P Quinn
Journal:  J Am Med Inform Assoc       Date:  2012-07-21       Impact factor: 4.497

9.  Estimating the Duration of Public Concern After the Fukushima Dai-ichi Nuclear Power Station Accident From the Occurrence of Radiation Exposure-Related Terms on Twitter: A Retrospective Data Analysis.

Authors:  Naoki Nishimoto; Mizuki Ota; Ayako Yagahara; Katsuhiko Ogasawara
Journal:  JMIR Public Health Surveill       Date:  2016-11-25

10.  Application of Text Information Extraction System for Real-Time Cancer Case Identification in an Integrated Healthcare Organization.

Authors:  Fagen Xie; Janet Lee; Corrine E Munoz-Plaza; Erin E Hahn; Wansu Chen
Journal:  J Pathol Inform       Date:  2017-12-14
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