Literature DB >> 24551429

ASLForm: an adaptive self learning medical form generating system.

Shuai Zheng1, Fusheng Wang2, James J Lu1.   

Abstract

To facilitate the process of extracting information from narrative medical reports and transforming extracted data into standardized structured forms, we present an interactive, incrementally learning based information extraction system - ASLForm. ASLForm provides users a convenient interface that can be used as a simple data extraction and data entry system. It is unique, however, in its ability to transparently analyze and quickly learn, from users' interactions with a small number of reports, the desired values for the data fields. Additional user feedback (through acceptance decision or edits on the generated values) can incrementally refine the decision model in real-time, which further reduces users' interaction effort thereafter. The system eventually achieves high accuracy on data extraction with minimal effort from users. ASLForm requires no special configuration or training sets, and is not constrained to specific domains, thus it is easy to use and highly portable. Our experiments demonstrate the effectiveness of the system.

Mesh:

Year:  2013        PMID: 24551429      PMCID: PMC3900168     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  12 in total

1.  Evaluation of negation phrases in narrative clinical reports.

Authors:  W W Chapman; W Bridewell; P Hanbury; G F Cooper; B G Buchanan
Journal:  Proc AMIA Symp       Date:  2001

2.  Extracting structured information from free text pathology reports.

Authors:  Gunther Schadow; Clement J McDonald
Journal:  AMIA Annu Symp Proc       Date:  2003

3.  Tagging gene and protein names in biomedical text.

Authors:  Lorraine Tanabe; W John Wilbur
Journal:  Bioinformatics       Date:  2002-08       Impact factor: 6.937

4.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

5.  caTIES: a grid based system for coding and retrieval of surgical pathology reports and tissue specimens in support of translational research.

Authors:  Rebecca S Crowley; Melissa Castine; Kevin Mitchell; Girish Chavan; Tara McSherry; Michael Feldman
Journal:  J Am Med Inform Assoc       Date:  2010 May-Jun       Impact factor: 4.497

6.  Recognizing obesity and comorbidities in sparse data.

Authors:  Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2009-04-23       Impact factor: 4.497

7.  Coding free text radiology reports using the Cancer Text Information Extraction System (caTIES).

Authors:  David Carrell; Diana Miglioretti; Rebecca Smith-Bindman
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

8.  The MITRE Identification Scrubber Toolkit: design, training, and assessment.

Authors:  John Aberdeen; Samuel Bayer; Reyyan Yeniterzi; Ben Wellner; Cheryl Clark; David Hanauer; Bradley Malin; Lynette Hirschman
Journal:  Int J Med Inform       Date:  2010-10-14       Impact factor: 4.046

9.  Identifying patient smoking status from medical discharge records.

Authors:  Ozlem Uzuner; Ira Goldstein; Yuan Luo; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

10.  DICOM structured reporting and cancer clinical trials results.

Authors:  David A Clunie
Journal:  Cancer Inform       Date:  2007-05-12
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  2 in total

Review 1.  Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.

Authors:  Kory Kreimeyer; Matthew Foster; Abhishek Pandey; Nina Arya; Gwendolyn Halford; Sandra F Jones; Richard Forshee; Mark Walderhaug; Taxiarchis Botsis
Journal:  J Biomed Inform       Date:  2017-07-17       Impact factor: 6.317

2.  Automated Information Extraction on Treatment and Prognosis for Non-Small Cell Lung Cancer Radiotherapy Patients: Clinical Study.

Authors:  Fusheng Wang; Wei Zou; Shuai Zheng; Salma K Jabbour; Shannon E O'Reilly; James J Lu; Lihua Dong; Lijuan Ding; Ying Xiao; Ning Yue
Journal:  JMIR Med Inform       Date:  2018-02-01
  2 in total

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