Literature DB >> 18693810

Detection of practice pattern trends through Natural Language Processing of clinical narratives and biomedical literature.

Elizabeth S Chen1, Peter D Stetson, Yves A Lussier, Marianthi Markatou, George Hripcsak, Carol Friedman.   

Abstract

Clinical knowledge, best evidence, and practice patterns evolve over time. The ability to track these changes and study practice trends may be valuable for performance measurement and quality improvement efforts. The goal of this study was to assess the feasibility and validity of methods to generate and compare trends in biomedical literature and clinical narrative. We focused on the challenge of detecting trends in medication usage over time for two diseases: HIV/AIDS and asthma. Information about disease-specific medications in published randomized control trials and discharge summaries at NewYork-Presbyterian Hospital over a ten-year period were extracted using Natural Language Processing. This paper reports on the ability of our semi-automated process to discover disease-drug practice pattern trends and interpretation of findings across the biomedical and clinical text sources.

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Year:  2007        PMID: 18693810      PMCID: PMC2655911     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  14 in total

1.  Exploring text mining from MEDLINE.

Authors:  Padmini Srinivasan; Thomas Rindflesch
Journal:  Proc AMIA Symp       Date:  2002

2.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

3.  Extracting phenotypic information from the literature via natural language processing.

Authors:  Lifeng Chen; Carol Friedman
Journal:  Stud Health Technol Inform       Date:  2004

4.  A statistical methodology for analyzing co-occurrence data from a large sample.

Authors:  Hui Cao; George Hripcsak; Marianthi Markatou
Journal:  J Biomed Inform       Date:  2006-12-01       Impact factor: 6.317

Review 5.  Bibliometric analysis of the literature of randomized controlled trials.

Authors:  Ming-yueh Tsay; Yen-hsu Yang
Journal:  J Med Libr Assoc       Date:  2005-10

6.  Disseminating natural language processed clinical narratives.

Authors:  Elizabeth S Chen; George Hripcsak; Carol Friedman
Journal:  AMIA Annu Symp Proc       Date:  2006

7.  Summarizing drug information in Medline citations.

Authors:  Marcelo Fiszman; Thomas C Rindflesch; Halil Kilicoglu
Journal:  AMIA Annu Symp Proc       Date:  2006

8.  Representing information in patient reports using natural language processing and the extensible markup language.

Authors:  C Friedman; G Hripcsak; L Shagina; H Liu
Journal:  J Am Med Inform Assoc       Date:  1999 Jan-Feb       Impact factor: 4.497

9.  A general natural-language text processor for clinical radiology.

Authors:  C Friedman; P O Alderson; J H Austin; J J Cimino; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 Mar-Apr       Impact factor: 4.497

10.  Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study.

Authors:  Elizabeth S Chen; George Hripcsak; Hua Xu; Marianthi Markatou; Carol Friedman
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

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  5 in total

1.  Active computerized pharmacovigilance using natural language processing, statistics, and electronic health records: a feasibility study.

Authors:  Xiaoyan Wang; George Hripcsak; Marianthi Markatou; Carol Friedman
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

2.  Extracting timing and status descriptors for colonoscopy testing from electronic medical records.

Authors:  Joshua C Denny; Josh F Peterson; Neesha N Choma; Hua Xu; Randolph A Miller; Lisa Bastarache; Neeraja B Peterson
Journal:  J Am Med Inform Assoc       Date:  2010 Jul-Aug       Impact factor: 4.497

3.  Identification of inactive medications in narrative medical text.

Authors:  Eugene M Breydo; Julia T Chu; Alexander Turchin
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

4.  The feasibility of using natural language processing to extract clinical information from breast pathology reports.

Authors:  Julliette M Buckley; Suzanne B Coopey; John Sharko; Fernanda Polubriaginof; Brian Drohan; Ahmet K Belli; Elizabeth M H Kim; Judy E Garber; Barbara L Smith; Michele A Gadd; Michelle C Specht; Constance A Roche; Thomas M Gudewicz; Kevin S Hughes
Journal:  J Pathol Inform       Date:  2012-06-30

5.  Characterizing environmental and phenotypic associations using information theory and electronic health records.

Authors:  Xiaoyan Wang; George Hripcsak; Carol Friedman
Journal:  BMC Bioinformatics       Date:  2009-09-17       Impact factor: 3.169

  5 in total

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