Literature DB >> 17238342

Summarizing drug information in Medline citations.

Marcelo Fiszman1, Thomas C Rindflesch, Halil Kilicoglu.   

Abstract

Adverse drug events and drug-drug interactions are a major concern in patient care. Although databases exist to provide information about drugs, they are not always up-to-date and complete (particularly regarding pharmacogenetics). We propose a methodology based on automatic summarization to identify drug information in Medline citations and present results to the user in a convenient form. We evaluate the method on a selection of citations discussing ten drugs ranging from the proton pump inhibitor lansoprazole to the vasoconstrictor sumatriptan. We suggest that automatic summarization can provide a valuable adjunct to curated drug databases in supporting quality patient care.

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Mesh:

Year:  2006        PMID: 17238342      PMCID: PMC1839479     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  13 in total

1.  Comparison of two knowledge bases on the detection of drug-drug interactions.

Authors:  G Del Fiol; B H Rocha; G J Kuperman; D W Bates; P Nohama
Journal:  Proc AMIA Symp       Date:  2000

2.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

3.  Aggregating UMLS semantic types for reducing conceptual complexity.

Authors:  A T McCray; A Burgun; O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

4.  The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text.

Authors:  Thomas C Rindflesch; Marcelo Fiszman
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

5.  Developing the ontological foundations of a terminological system for end-stage diseases, organ failure, dialysis and transplantation.

Authors:  Christian Jacquelinet; Anita Burgun; Denis Delamarre; Nigel Strang; Sami Djabbour; Bernard Boutin; Pierre Le Beux
Journal:  Int J Med Inform       Date:  2003-07       Impact factor: 4.046

6.  Summarization of an online medical encyclopedia.

Authors:  Marcelo Fiszman; Thomas C Rindflesch; Halil Kilicoglu
Journal:  Stud Health Technol Inform       Date:  2004

7.  A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge.

Authors:  Daniel L Rubin; Caroline F Thorn; Teri E Klein; Russ B Altman
Journal:  J Am Med Inform Assoc       Date:  2004-11-23       Impact factor: 4.497

8.  Computational approaches for pharmacogenomics.

Authors:  Marylyn D Ritchie; Michelle W Carillo; Russell A Wilke
Journal:  Pac Symp Biocomput       Date:  2005

9.  Lexical methods for managing variation in biomedical terminologies.

Authors:  A T McCray; S Srinivasan; A C Browne
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994

10.  Adverse drug events and medication errors: detection and classification methods.

Authors:  T Morimoto; T K Gandhi; A C Seger; T C Hsieh; D W Bates
Journal:  Qual Saf Health Care       Date:  2004-08
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  15 in total

1.  Rethinking information delivery: using a natural language processing application for point-of-care data discovery.

Authors:  T Elizabeth Workman; Joan M Stoddart
Journal:  J Med Libr Assoc       Date:  2012-04

2.  Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information.

Authors:  T Elizabeth Workman; Marcelo Fiszman; John F Hurdle; Thomas C Rindflesch
Journal:  J Med Libr Assoc       Date:  2010-10

3.  Detection of practice pattern trends through Natural Language Processing of clinical narratives and biomedical literature.

Authors:  Elizabeth S Chen; Peter D Stetson; Yves A Lussier; Marianthi Markatou; George Hripcsak; Carol Friedman
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

4.  Leveraging semantic knowledge in IRB databases to improve translation science.

Authors:  John F Hurdle; Jeffery Botkin; Thomas C Rindflesch
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

Review 5.  Recent progress in automatically extracting information from the pharmacogenomic literature.

Authors:  Yael Garten; Adrien Coulet; Russ B Altman
Journal:  Pharmacogenomics       Date:  2010-10       Impact factor: 2.533

6.  Integrating heterogeneous knowledge sources to acquire executable drug-related knowledge.

Authors:  Xiaoyan Wang; Herbert S Chase; Jianhua Li; George Hripcsak; Carol Friedman
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

7.  Degree centrality for semantic abstraction summarization of therapeutic studies.

Authors:  Han Zhang; Marcelo Fiszman; Dongwook Shin; Christopher M Miller; Graciela Rosemblat; Thomas C Rindflesch
Journal:  J Biomed Inform       Date:  2011-05-08       Impact factor: 6.317

8.  Open issues in intelligent personal health record--an updated status report for 2012.

Authors:  Gang Luo
Journal:  J Med Syst       Date:  2013-04-13       Impact factor: 4.460

9.  Adapting Semantic Natural Language Processing Technology to Address Information Overload in Influenza Epidemic Management.

Authors:  Alla Keselman; Graciela Rosemblat; Halil Kilicoglu; Marcelo Fiszman; Honglan Jin; Dongwook Shin; Thomas C Rindflesch
Journal:  J Am Soc Inf Sci Technol       Date:  2010-12-01

Review 10.  Text summarization in the biomedical domain: a systematic review of recent research.

Authors:  Rashmi Mishra; Jiantao Bian; Marcelo Fiszman; Charlene R Weir; Siddhartha Jonnalagadda; Javed Mostafa; Guilherme Del Fiol
Journal:  J Biomed Inform       Date:  2014-07-10       Impact factor: 6.317

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