Literature DB >> 12463919

Exploring text mining from MEDLINE.

Padmini Srinivasan1, Thomas Rindflesch.   

Abstract

We present a text mining application that exploits the MeSH heading subheading combinations present in MEDLINE records. The process begins with a user specified pair of subheadings. Co-occurring concepts qualified by these subheadings are regarded as being conceptually related and thus extracted. A parallel process using SemRep, a linguistic tool, also extracts conceptually related concept pairs from the titles of MEDLINE records. The pairs extracted via MeSH and the pairs extracted via SemRep are compared to yield a high confidence subset. These pairs are then combined to project a summary view associated with the selected subheading pair. For each concept the "diversity" in the set of related concepts is assessed. We suggest that this summary and the diversity indicators will be useful a health care practitioner or researcher. We illustrate this application with the subheading pair "drug therapy" and "therapeutic use" which approximates the treatment relationship between Drugs and Diseases.

Mesh:

Year:  2002        PMID: 12463919      PMCID: PMC2244226     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  9 in total

1.  Use of keyword hierarchies to interpret gene expression patterns.

Authors:  D R Masys; J B Welsh; J Lynn Fink; M Gribskov; I Klacansky; J Corbeil
Journal:  Bioinformatics       Date:  2001-04       Impact factor: 6.937

2.  A literature network of human genes for high-throughput analysis of gene expression.

Authors:  T K Jenssen; A Laegreid; J Komorowski; E Hovig
Journal:  Nat Genet       Date:  2001-05       Impact factor: 38.330

3.  Argument identification for arterial branching predications asserted in cardiac catheterization reports.

Authors:  T C Rindflesch; C A Bean; C A Sneiderman
Journal:  Proc AMIA Symp       Date:  2000

4.  Automated knowledge extraction from MEDLINE citations.

Authors:  E A Mendonça; J J Cimino
Journal:  Proc AMIA Symp       Date:  2000

5.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

6.  MeSHmap: a text mining tool for MEDLINE.

Authors:  P Srinivasan
Journal:  Proc AMIA Symp       Date:  2001

7.  Genes, themes and microarrays: using information retrieval for large-scale gene analysis.

Authors:  H Shatkay; S Edwards; W J Wilbur; M Boguski
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  2000

8.  Developing optimal search strategies for detecting clinically sound studies in MEDLINE.

Authors:  R B Haynes; N Wilczynski; K A McKibbon; C J Walker; J C Sinclair
Journal:  J Am Med Inform Assoc       Date:  1994 Nov-Dec       Impact factor: 4.497

9.  Automatic knowledge acquisition from MEDLINE.

Authors:  J J Cimino; G O Barnett
Journal:  Methods Inf Med       Date:  1993-04       Impact factor: 2.176

  9 in total
  25 in total

1.  Categorization of sentence types in medical abstracts.

Authors:  Larry McKnight; Padmini Srinivasan
Journal:  AMIA Annu Symp Proc       Date:  2003

2.  Semantic relations asserting the etiology of genetic diseases.

Authors:  Thomas C Rindflesch; Bisharah Libbus; Dimitar Hristovski; Alan R Aronson; Halil Kilicoglu
Journal:  AMIA Annu Symp Proc       Date:  2003

3.  Integrating a hypernymic proposition interpreter into a semantic processor for biomedical texts.

Authors:  Marcelo Fiszman; Thomas C Rindflesch; Halil Kilicoglu
Journal:  AMIA Annu Symp Proc       Date:  2003

4.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

5.  A drug-adverse event extraction algorithm to support pharmacovigilance knowledge mining from PubMed citations.

Authors:  Wei Wang; Krystl Haerian; Hojjat Salmasian; Rave Harpaz; Herbert Chase; Carol Friedman
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

6.  Semantic relations for problem-oriented medical records.

Authors:  Ozlem Uzuner; Jonathan Mailoa; Russell Ryan; Tawanda Sibanda
Journal:  Artif Intell Med       Date:  2010-06-19       Impact factor: 5.326

7.  Immune modulators in disease: integrating knowledge from the biomedical literature and gene expression.

Authors:  Nophar Geifman; Sanchita Bhattacharya; Atul J Butte
Journal:  J Am Med Inform Assoc       Date:  2015-12-11       Impact factor: 4.497

8.  MachineProse: an ontological framework for scientific assertions.

Authors:  Deendayal Dinakarpandian; Yugyung Lee; Kartik Vishwanath; Rohini Lingambhotla
Journal:  J Am Med Inform Assoc       Date:  2005-12-15       Impact factor: 4.497

9.  Towards semantic role labeling & IE in the medical literature.

Authors:  Yacov Kogan; Nigel Collier; Serguei Pakhomov; Michael Krauthammer
Journal:  AMIA Annu Symp Proc       Date:  2005

10.  Generating models of surgical procedures using UMLS concepts and multiple sequence alignment.

Authors:  Frank Meng; Leonard W D'Avolio; Andrew A Chen; Ricky K Taira; Hooshang Kangarloo
Journal:  AMIA Annu Symp Proc       Date:  2005
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.