Literature DB >> 18693797

The @neurIST ontology of intracranial aneurysms: providing terminological services for an integrated IT infrastructure.

Martin Boeker1, Holger Stenzhorn, Kai Kumpf, Philippe Bijlenga, Stefan Schulz, Susanne Hanser.   

Abstract

The @neurIST ontology is currently under development within the scope of the European project @neurIST intended to serve as a module in a complex architecture aiming at providing a better understanding and management of intracranial aneurysms and subarachnoid hemorrhages. Due to the integrative structure of the project the ontology needs to represent entities from various disciplines on a large spatial and temporal scale. Initial term acquisition was performed by exploiting a database scaffold, literature analysis and communications with domain experts. The ontology design is based on the DOLCE upper ontology and other existing domain ontologies were linked or partly included whenever appropriate (e.g., the FMA for anatomical entities and the UMLS for definitions and lexical information). About 2300 predominantly medical entities were represented but also a multitude of biomolecular, epidemiological, and hemodynamic entities. The usage of the ontology in the project comprises terminological control, text mining, annotation, and data mediation.

Entities:  

Mesh:

Year:  2007        PMID: 18693797      PMCID: PMC2655878     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  6 in total

1.  A reference ontology for biomedical informatics: the Foundational Model of Anatomy.

Authors:  Cornelius Rosse; José L V Mejino
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

2.  The Unified Medical Language System (UMLS): integrating biomedical terminology.

Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Biodynamic ontology: applying BFO in the biomedical domain.

Authors:  Pierre Grenon; Barry Smith; Louis Goldberg
Journal:  Stud Health Technol Inform       Date:  2004

4.  Unruptured intracranial aneurysms--risk of rupture and risks of surgical intervention.

Authors: 
Journal:  N Engl J Med       Date:  1998-12-10       Impact factor: 91.245

5.  International Subarachnoid Aneurysm Trial (ISAT) of neurosurgical clipping versus endovascular coiling in 2143 patients with ruptured intracranial aneurysms: a randomised trial.

Authors:  Andrew Molyneux; Richard Kerr; Irene Stratton; Peter Sandercock; Mike Clarke; Julia Shrimpton; Rury Holman
Journal:  Lancet       Date:  2002-10-26       Impact factor: 79.321

6.  Relations in biomedical ontologies.

Authors:  Barry Smith; Werner Ceusters; Bert Klagges; Jacob Köhler; Anand Kumar; Jane Lomax; Chris Mungall; Fabian Neuhaus; Alan L Rector; Cornelius Rosse
Journal:  Genome Biol       Date:  2005-04-28       Impact factor: 13.583

  6 in total
  7 in total

1.  NeuroLOG: sharing neuroimaging data using an ontology-based federated approach.

Authors:  Bernard Gibaud; Gilles Kassel; Michel Dojat; Bénédicte Batrancourt; Franck Michel; Alban Gaignard; Johan Montagnat
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Strengths and limitations of formal ontologies in the biomedical domain.

Authors:  Stefan Schulz; Holger Stenzhorn; Martin Boeker; Barry Smith
Journal:  Rev Electron Comun Inf Inov Saude       Date:  2009-03-01

3.  Adapting Clinical Ontologies in Real-World Environments.

Authors:  Holger Stenzhorn; Stefan Schulz; Martin Boeker; Barry Smith
Journal:  J Univers. Comput Sci       Date:  2008

4.  A Case-based Retrieval System using Natural Language Processing and Population-based Visualization.

Authors:  William Hsu; Ricky K Taira; Fernando Viñuela; Alex A T Bui
Journal:  Proc IEEE Int Conf Healthc Inform Imaging Syst Biol       Date:  2011-07

5.  An Approach for Incorporating Context in Building Probabilistic Predictive Models.

Authors:  Juan Anna Wu; William Hsu; Alex At Bui
Journal:  Proc IEEE Int Conf Healthc Inform Imaging Syst Biol       Date:  2012-12-03

6.  OntoCheck: verifying ontology naming conventions and metadata completeness in Protégé 4.

Authors:  Daniel Schober; Ilinca Tudose; Vojtech Svatek; Martin Boeker
Journal:  J Biomed Semantics       Date:  2012-09-21

7.  Development and application of the ocular immune-mediated inflammatory diseases ontology enhanced with synonyms from online patient support forum conversation.

Authors:  Samantha C Pendleton; Luke T Slater; Andreas Karwath; Rose M Gilbert; Nicola Davis; Konrad Pesudovs; Xiaoxuan Liu; Alastair K Denniston; Georgios V Gkoutos; Tasanee Braithwaite
Journal:  Comput Biol Med       Date:  2021-06-08       Impact factor: 4.589

  7 in total

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