Literature DB >> 27570833

A Case-based Retrieval System using Natural Language Processing and Population-based Visualization.

William Hsu1, Ricky K Taira1, Fernando Viñuela2, Alex A T Bui1.   

Abstract

Electronic medical records capture large quantities of patient data generated as a result of routine care. Secondary use of this data for clinical research could provide new insights into the evolution of diseases and help assess the effectiveness of available interventions. Unfortunately, the unstructured nature of clinical data hinders a user's ability to understand this data: tools are needed to structure, model, and visualize the data to elucidate patterns in a patient population. We present a case-based retrieval framework that incorporates an extraction tool to identify concepts from clinical reports, a disease model to capture necessary context for interpreting extracted concepts, and a model-driven visualization to facilitate querying and interpretation of the results. We describe how the model is used to group, filter, and retrieve similar cases. We present an application of the framework that aids users in exploring a population of intracranial aneurysm patients.

Entities:  

Keywords:  Case-based retrieval; information visualization; knowledge reprsentation; natural language processing

Year:  2011        PMID: 27570833      PMCID: PMC5001495          DOI: 10.1109/HISB.2011.3

Source DB:  PubMed          Journal:  Proc IEEE Int Conf Healthc Inform Imaging Syst Biol        ISSN: 2375-8201


  22 in total

Review 1.  Cerebral aneurysms.

Authors:  Jonathan L Brisman; Joon K Song; David W Newell
Journal:  N Engl J Med       Date:  2006-08-31       Impact factor: 91.245

2.  Toward reuse of clinical data for research and quality improvement: the end of the beginning?

Authors:  Mark G Weiner; Peter J Embi
Journal:  Ann Intern Med       Date:  2009-07-28       Impact factor: 25.391

3.  Temporal summaries: supporting temporal categorical searching, aggregation and comparison.

Authors:  Taowei David Wang; Catherine Plaisant; Ben Shneiderman; Neil Spring; David Roseman; Greg Marchand; Vikramjit Mukherjee; Mark Smith
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Nov-Dec       Impact factor: 4.579

4.  A Neuro-Oncology Workstation for Structuring, Modeling, and Visualizing Patient Records.

Authors:  William Hsu; Corey W Arnold; Ricky K Taira
Journal:  IHI       Date:  2010-11

5.  The stadium diagram, a web-based tool for visualizing the expected outcomes of alternative clinical management strategies.

Authors:  Douglas S Bell; Steven Sobolevsky; Frank C Day; Jerome R Hoffman; Jerilyn K Higa; Michael S Wilkes
Journal:  AMIA Annu Symp Proc       Date:  2005

6.  A framework for modelling the electronic medical record.

Authors:  A L Rector; W A Nowlan; S Kay; C A Goble; T J Howkins
Journal:  Methods Inf Med       Date:  1993-04       Impact factor: 2.176

7.  Natural history of unruptured intracranial aneurysms: probability of and risk factors for aneurysm rupture.

Authors:  Seppo Juvela; Matti Porras; Kristiina Poussa
Journal:  J Neurosurg       Date:  2008-05       Impact factor: 5.115

Review 8.  What can natural language processing do for clinical decision support?

Authors:  Dina Demner-Fushman; Wendy W Chapman; Clement J McDonald
Journal:  J Biomed Inform       Date:  2009-08-13       Impact factor: 6.317

9.  Automated medical problem list generation: towards a patient timeline.

Authors:  Alex A T Bui; Ricky K Taira; Suzie El-Saden; Alicia Dordoni; Denise R Aberle
Journal:  Stud Health Technol Inform       Date:  2004

10.  Reporting standards for endovascular repair of saccular intracranial cerebral aneurysms.

Authors:  P M Meyers; H C Schumacher; R T Higashida; C P Derdeyn; G M Nesbit; D Sacks; L R Wechsler; J B Bederson; S D Lavine; P Rasmussen
Journal:  AJNR Am J Neuroradiol       Date:  2010-01       Impact factor: 4.966

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