Literature DB >> 15853262

Biodynamic ontology: applying BFO in the biomedical domain.

Pierre Grenon1, Barry Smith, Louis Goldberg.   

Abstract

We propose a modular formal ontology of the biomedical domain with two components, one for biological objects, corresponding broadly to anatomy, and one for biological processes, corresponding broadly to physiology. The result constitutes what might be described as a joint venture between two perspectives--of so-called three-dimensionalism and four-dimensionalism--which are normally regarded as incompatible. We outline an approach which allows them to be combined together, and provide examples of its application in biomedicine.

Entities:  

Mesh:

Year:  2004        PMID: 15853262

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  94 in total

1.  Adapting Clinical Ontologies in Real-World Environments.

Authors:  Holger Stenzhorn; Stefan Schulz; Martin Boeker; Barry Smith
Journal:  J Univers. Comput Sci       Date:  2008

2.  Saliva Ontology: an ontology-based framework for a Salivaomics Knowledge Base.

Authors:  Jiye Ai; Barry Smith; David T Wong
Journal:  BMC Bioinformatics       Date:  2010-06-03       Impact factor: 3.169

3.  A strategy for improving and integrating biomedical ontologies.

Authors:  Cornelius Rosse; Anand Kumar; Jose L V Mejino; Daniel L Cook; Landon T Detwiler; Barry Smith
Journal:  AMIA Annu Symp Proc       Date:  2005

4.  A realism-based approach to the evolution of biomedical ontologies.

Authors:  Werner Ceusters; Barry Smith
Journal:  AMIA Annu Symp Proc       Date:  2006

5.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

6.  Negative findings in electronic health records and biomedical ontologies: a realist approach.

Authors:  Werner Ceusters; Peter Elkin; Barry Smith
Journal:  Int J Med Inform       Date:  2007-03-21       Impact factor: 4.046

Review 7.  Development of an informatics infrastructure for data exchange of biomolecular simulations: Architecture, data models and ontology.

Authors:  J C Thibault; D R Roe; K Eilbeck; T E Cheatham; J C Facelli
Journal:  SAR QSAR Environ Res       Date:  2015-09-21       Impact factor: 3.000

8.  A UML profile for the OBO relation ontology.

Authors:  Gabriela D A Guardia; Ricardo Z N Vêncio; Cléver R G de Farias
Journal:  BMC Genomics       Date:  2012-10-19       Impact factor: 3.969

9.  Using an integrated ontology and information model for querying and reasoning about phenotypes: The case of autism.

Authors:  Samson W Tu; Samson Tu; Lakshika Tennakoon; Martin O'Connor; Martin Connor; Ravi Shankar; Amar Das
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

10.  Preserving sequence annotations across reference sequences.

Authors:  Zuotian Tatum; Marco Roos; Andrew P Gibson; Peter Em Taschner; Mark Thompson; Erik A Schultes; Jeroen Fj Laros
Journal:  J Biomed Semantics       Date:  2014-06-03
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.