Literature DB >> 18687954

Large-scale molecular dynamics simulations of self-assembling systems.

Michael L Klein1, Wataru Shinoda.   

Abstract

Relentless increases in the size and performance of multiprocessor computers, coupled with new algorithms and methods, have led to novel applications of simulations across chemistry. This Perspective focuses on the use of classical molecular dynamics and so-called coarse-grain models to explore phenomena involving self-assembly in complex fluids and biological systems.

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Year:  2008        PMID: 18687954     DOI: 10.1126/science.1157834

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  57 in total

1.  Effect of the thermostat in the molecular dynamics simulation on the folding of the model protein chignolin.

Authors:  Carlos A Fuzo; Léo Degrève
Journal:  J Mol Model       Date:  2011-11-25       Impact factor: 1.810

Review 2.  From self-assembled vesicles to protocells.

Authors:  Irene A Chen; Peter Walde
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-02       Impact factor: 10.005

3.  Brownian dynamics simulation of protein solutions: structural and dynamical properties.

Authors:  Paolo Mereghetti; Razif R Gabdoulline; Rebecca C Wade
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

4.  Interdigitation between Triglycerides and Lipids Modulates Surface Properties of Lipid Droplets.

Authors:  Amélie Bacle; Romain Gautier; Catherine L Jackson; Patrick F J Fuchs; Stefano Vanni
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

Review 5.  Nanocarrier Hydrodynamics and Binding in Targeted Drug Delivery: Challenges in Numerical Modeling and Experimental Validation.

Authors:  Portonovo S Ayyaswamy; Vladimir Muzykantov; David M Eckmann; Ravi Radhakrishnan
Journal:  J Nanotechnol Eng Med       Date:  2013-07-11

Review 6.  Biomolecularmodeling and simulation: a field coming of age.

Authors:  Tamar Schlick; Rosana Collepardo-Guevara; Leif Arthur Halvorsen; Segun Jung; Xia Xiao
Journal:  Q Rev Biophys       Date:  2011-05       Impact factor: 5.318

Review 7.  Development of an informatics infrastructure for data exchange of biomolecular simulations: Architecture, data models and ontology.

Authors:  J C Thibault; D R Roe; K Eilbeck; T E Cheatham; J C Facelli
Journal:  SAR QSAR Environ Res       Date:  2015-09-21       Impact factor: 3.000

8.  Probing peptide nanotube self-assembly at a liquid-liquid interface with coarse-grained molecular dynamics.

Authors:  Ekta Khurana; Russell H DeVane; Axel Kohlmeyer; Michael L Klein
Journal:  Nano Lett       Date:  2008-10-15       Impact factor: 11.189

9.  Coarse-grained molecular dynamics studies of the structure and stability of peptide-based drug amphiphile filaments.

Authors:  Myungshim Kang; Honggang Cui; Sharon M Loverde
Journal:  Soft Matter       Date:  2017-11-01       Impact factor: 3.679

Review 10.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

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